Crystal structure of a DUF4785 family protein (lpg0956) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1 at 2.00 A resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | beta-Galactosidase/glucuronidase domain-like | 8052438 | 3002047 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | beta-Galactosidase/glucuronidase domain-like | 8052437 | 3002047 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | galactose-binding domain-like | 8052439 | 3000087 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Lpg0956-like | 8044753 | 4004116 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | galactose-binding domain-like | 8052439 | 3000087 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | beta-Galactosidase/glucuronidase domain-like | 8052437 | 3002047 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | beta-Galactosidase/glucuronidase domain-like | 8052438 | 3002047 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Kunitz_BPTI | e4kh9B1 | A: a/b three-layered sandwiches | X: C-terminal domain in some PLP-dependent transferases | H: C-terminal domain in some PLP-dependent transferases | T: C-terminal domain in some PLP-dependent transferases | F: Kunitz_BPTI | ECOD (v294.1) |
| A | DUF4785_1st | e4kh9A1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF4785_1st | ECOD (v294.1) |
| A | DUF4785_2nd | e4kh9A2 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF4785_2nd | ECOD (v294.1) |
| A | DUF4785_3rd | e4kh9A3 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF4785_3rd | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.60.40.3870 | Mainly Beta | Sandwich | Immunoglobulin-like | Uncharacterised protein PF16024, DUF4785 | CATH (4.3.0) |
| B | 2.60.40.1930 | Mainly Beta | Sandwich | Immunoglobulin-like | Macroglobulin (MG2) domain | CATH (4.3.0) |
| B | 2.60.120.1370 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| A | 2.60.40.3870 | Mainly Beta | Sandwich | Immunoglobulin-like | Uncharacterised protein PF16024, DUF4785 | CATH (4.3.0) |
| A | 2.60.40.1930 | Mainly Beta | Sandwich | Immunoglobulin-like | Macroglobulin (MG2) domain | CATH (4.3.0) |
| A | 2.60.120.1370 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF16024 | Domain of unknown function (DUF4785) N-terminal domain (DUF4785_1st) | Domain of unknown function (DUF4785) N-terminal domain | This family of proteins is found in bacteria. Proteins in this family are typically between 392 and 442 amino acids in length. This entry represents the N-terminal jelly roll domain. | Domain | |
| PF20943 | Domain of unknown function (DUF4785) C-terminal domain (DUF4785_3rd) | Domain of unknown function (DUF4785) C-terminal domain | This family of proteins is found in bacteria. Proteins in this family are typically between 392 and 442 amino acids in length. This entry represents the C-terminal immunoglobulin-like domain. | Domain | |
| PF20942 | Domain of unknown function (DUF4785) central domain (DUF4785_2nd) | Domain of unknown function (DUF4785) central domain | This family of proteins is found in bacteria. Proteins in this family are typically between 392 and 442 amino acids in length. This entry represents the central immunoglobulin-like domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| hypothetical protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR031979 | DUF4785, N-terminal domain | Domain | |
| IPR048296 | DUF4785, central domain | Domain | |
| IPR048295 | DUF4785, C-terminal domain | Domain |
