4K92 | pdb_00004k92

A Cryptic TOG Domain with a Distinct Architecture Underlies CLASP-Dependent Bipolar Spindle Formation

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Choline_kinase, EcKL	e4k92B1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Choline_kinase, EcKL	ECOD (v294.1)
A	CheW	e4k92A1	A: a/b three-layered sandwiches	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like	T: Insertion subdomain in DsbA-like	F: CheW	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (4.3.0)
A	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF12348	CLASP N terminal (CLASP_N)	CLASP N terminal	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	CLIP-associating protein 1	cytoskeletal protein binding microtubule binding protein binding binding tubulin binding microtubule plus-end binding dystroglycan binding kinetochore binding	regulation of cellular process regulation of cellular component organization cell-substrate junction assembly cellular component organization cellular component biogenesis cell adhesion cellular component assembly cell junction assembly regulation of cell-substrate junction organization cellular component organization or biogenesis focal adhesion assembly regulation of biological process regulation of cell-substrate adhesion regulation of cell adhesion regulation of cellular process regulation of cellular component organization cell-substrate junction assembly cellular component organization cellular component biogenesis cell adhesion cellular component assembly cell junction assembly regulation of cell-substrate junction organization cellular component organization or biogenesis focal adhesion assembly regulation of biological process regulation of cell-substrate adhesion regulation of cell adhesion biological regulation cell-substrate adhesion regulation of cellular component biogenesis regulation of cell junction assembly cell junction organization cell-matrix adhesion regulation of cell-matrix adhesion cell-substrate junction organization cellular process regulation of focal adhesion assembly regulation of cell-substrate junction assembly cell division negative regulation of locomotion regulation of cell motility response to stimulus regulation of response to external stimulus negative regulation of biological process negative regulation of wound healing, spreading of epidermal cells regulation of response to wounding response to stress regulation of response to stress regulation of cell migration anatomical structure development negative regulation of cellular process cell migration response to wounding cell motility regulation of wound healing, spreading of epidermal cells locomotion negative regulation of cell migration developmental process wound healing epithelium development negative regulation of response to stimulus negative regulation of wound healing morphogenesis of an epithelium response to external stimulus negative regulation of response to wounding epiboly involved in wound healing tissue development morphogenesis of an epithelial sheet wound healing, spreading of epidermal cells tissue morphogenesis anatomical structure morphogenesis regulation of response to stimulus negative regulation of response to external stimulus regulation of locomotion regulation of wound healing epiboly negative regulation of cell motility wound healing, spreading of cells establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment of localization mitotic cell cycle localization establishment of mitotic spindle localization organelle organization mitotic cell cycle process establishment of spindle localization organelle localization establishment of localization in cell microtubule-based process cell cycle microtubule cytoskeleton organization involved in mitosis cytoskeleton organization cell cycle process microtubule anchoring establishment or maintenance of cell polarity establishment of cell polarity establishment of spindle orientation regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization microtubule polymerization or depolymerization negative regulation of microtubule polymerization or depolymerization negative regulation of cellular component organization negative regulation of cytoskeleton organization regulation of microtubule-based process regulation of organelle organization negative regulation of organelle organization regulation of microtubule cytoskeleton organization microtubule organizing center organization positive regulation of organelle organization positive regulation of cellular component organization positive regulation of biological process regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of protein polymerization protein-containing complex assembly positive regulation of cellular process protein polymerization positive regulation of microtubule polymerization or depolymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization microtubule polymerization positive regulation of supramolecular fiber organization positive regulation of microtubule polymerization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization supramolecular fiber organization microtubule nucleation cellular component disassembly extracellular matrix disassembly positive regulation of extracellular matrix organization extracellular matrix organization positive regulation of extracellular matrix disassembly regulation of extracellular matrix organization regulation of extracellular matrix disassembly extracellular structure organization external encapsulating structure organization microtubule bundle formation regulation of actin filament-based process regulation of actin filament bundle assembly actin filament bundle organization actin filament-based process stress fiber assembly negative regulation of supramolecular fiber organization regulation of actin filament organization negative regulation of stress fiber assembly actin cytoskeleton organization actomyosin structure organization actin filament organization negative regulation of actin filament bundle assembly regulation of stress fiber assembly contractile actin filament bundle assembly regulation of actomyosin structure organization regulation of actin cytoskeleton organization actin filament bundle assembly regulation of localization transport positive regulation of secretion by cell positive regulation of exocytosis vesicle-mediated transport regulation of secretion by cell secretion by cell positive regulation of secretion regulation of transport secretion export from cell regulation of vesicle-mediated transport regulation of secretion positive regulation of transport exocytosis regulation of exocytosis mitotic nuclear division organelle fission cell cycle phase transition exit from mitosis nuclear division mitotic cell cycle phase transition basement membrane organization astral microtubule organization cytoplasmic microtubule organization spindle organization membraneless organelle assembly mitotic sister chromatid segregation chromosome segregation organelle assembly chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly nuclear chromosome segregation vesicle localization establishment of vesicle localization vesicle targeting negative regulation of microtubule depolymerization protein-containing complex disassembly regulation of protein-containing complex disassembly regulation of microtubule depolymerization negative regulation of protein-containing complex disassembly regulation of protein depolymerization negative regulation of protein depolymerization microtubule depolymerization protein depolymerization Golgi organization endomembrane system organization multicellular organismal process positive regulation of locomotion positive regulation of cell migration positive regulation of epithelial cell migration tissue migration ameboidal-type cell migration positive regulation of cell motility regulation of multicellular organismal process epithelial cell migration regulation of epithelial cell migration epithelium migration	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle centrosomal corona intracellular organelle centrosome microtubule organizing center cytoskeleton organelle membraneless organelle microtubule cytoskeleton cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle centrosomal corona intracellular organelle centrosome microtubule organizing center cytoskeleton organelle membraneless organelle microtubule cytoskeleton membrane-bounded organelle Golgi apparatus intracellular membrane-bounded organelle endomembrane system cell periphery cell cortex basal part of cell cell cortex region cytoplasmic region basal cortex polymeric cytoskeletal fiber microtubule end supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule plus-end mitotic spindle spindle spindle microtubule kinetochore microtubule chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region condensed chromosome cortical cytoskeleton cortical microtubule cytoskeleton cytoplasmic microtubule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR048491	XMAP215/Dis1/CLASP, TOG domain	Domain
A, B	IPR057546	Stalled ribosome sensor GCN1-like, HEAT repeats region	Domain
A, B	IPR034085	TOG domain	Domain
A, B	IPR021133	HEAT, type 2	Repeat
A, B	IPR011989	Armadillo-like helical	Homologous Superfamily
A, B	IPR024395	CLASP N-terminal domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q7Z460	Behcet disease testicular germ cell tumor lung cancer ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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