4JYO

Structural basis for angiopoietin-1 mediated signaling initiation

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth X]	d4jyox_	Alpha and beta proteins (a+b)	Fibrinogen C-terminal domain-like	Fibrinogen C-terminal domain-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth X]	SCOP2 Family	Fibrinogen C-terminal domain-like	8070777	4002544	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Fibrinogen C-terminal domain-like	8070778	3001395	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	Fibrinogen_C	e4jyoX1	A: a+b complex topology	X: Fibrinogen C-terminal domain-like (From Topology)	H: Fibrinogen C-terminal domain-like (From Topology)	T: Fibrinogen C-terminal domain-like	F: Fibrinogen_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	3.90.215.10	Alpha Beta	Alpha-Beta Complex	Gamma Fibrinogen	Chain A, domain 1	CATH (4.3.0)
A [auth X]	4.10.530.10	Few Secondary Structures	Irregular	Gamma-fibrinogen Carboxyl Terminal Fragment	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF00147	Fibrinogen beta and gamma chains, C-terminal globular domain (Fibrinogen_C)	Fibrinogen beta and gamma chains, C-terminal globular domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	Angiopoietin-1	protein tyrosine kinase binding protein binding binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding identical protein binding	protein localization negative regulation of protein transport regulation of localization establishment of protein localization negative regulation of nucleocytoplasmic transport nitrogen compound transport regulation of cellular process nucleocytoplasmic transport nuclear transport negative regulation of biological process negative regulation of intracellular protein transport negative regulation of transport localization import into nucleus cellular macromolecule localization protein localization negative regulation of protein transport regulation of localization establishment of protein localization negative regulation of nucleocytoplasmic transport nitrogen compound transport regulation of cellular process nucleocytoplasmic transport nuclear transport negative regulation of biological process negative regulation of intracellular protein transport negative regulation of transport localization import into nucleus cellular macromolecule localization establishment of localization in cell regulation of intracellular transport regulation of biological process organic substance transport negative regulation of establishment of protein localization intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus establishment of localization establishment of protein localization to organelle regulation of intracellular protein transport intracellular protein transport cellular localization regulation of protein localization transport regulation of protein localization to nucleus negative regulation of protein import into nucleus regulation of protein import into nucleus protein import into nucleus negative regulation of cellular process negative regulation of protein localization negative regulation of intracellular transport regulation of transport biological regulation regulation of establishment of protein localization regulation of protein transport negative regulation of protein localization to nucleus protein transport regulation of cellular localization macromolecule localization protein localization to organelle cellular process carbohydrate derivative biosynthetic process mucopolysaccharide metabolic process organonitrogen compound metabolic process heparin metabolic process cellular biosynthetic process cellular metabolic process glycosaminoglycan metabolic process organonitrogen compound biosynthetic process carbohydrate derivative metabolic process heparin biosynthetic process macromolecule biosynthetic process sulfur compound biosynthetic process organic substance metabolic process biosynthetic process aminoglycan metabolic process organic substance biosynthetic process aminoglycan biosynthetic process sulfur compound metabolic process metabolic process glycosaminoglycan biosynthetic process macromolecule metabolic process positive regulation of biological process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression regulation of cellular biosynthetic process regulation of gene expression positive regulation of gene expression regulation of macromolecule biosynthetic process regulation of metabolic process positive regulation of cellular biosynthetic process developmental process multicellular organismal process animal organ development renal system development vasculature development kidney vasculature development circulatory system development glomerulus development multicellular organism development renal system vasculature development anatomical structure development glomerulus vasculature development nephron development kidney development system development blood vessel development regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process protein metabolic process protein modification process phosphorus metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process primary metabolic process negative regulation of protein phosphorylation macromolecule modification negative regulation of phosphorus metabolic process regulation of phosphorylation regulation of phosphorus metabolic process negative regulation of phosphorylation positive chemotaxis chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion positive regulation of phosphorylation positive regulation of protein metabolic process regulation of peptidyl-serine phosphorylation positive regulation of phosphate metabolic process peptidyl-serine modification positive regulation of protein modification process peptidyl-serine phosphorylation peptidyl-amino acid modification positive regulation of protein phosphorylation positive regulation of phosphorus metabolic process positive regulation of peptidyl-serine phosphorylation cellular developmental process hemopoiesis cell differentiation cell development regulation of immune effector process cytokine production regulation of immune system process negative regulation of cytokine production involved in immune response regulation of cytokine production involved in immune response immune response negative regulation of immune effector process negative regulation of cellular biosynthetic process immune effector process negative regulation of production of molecular mediator of immune response negative regulation of gene expression negative regulation of macromolecule biosynthetic process regulation of production of molecular mediator of immune response negative regulation of multicellular organismal process regulation of cytokine production regulation of multicellular organismal process cytokine production involved in immune response production of molecular mediator of immune response negative regulation of cytokine production negative regulation of immune system process negative regulation of biosynthetic process immune system process cellular response to stimulus cell surface receptor signaling pathway signaling Tie signaling pathway cell surface receptor protein tyrosine kinase signaling pathway cell communication signal transduction enzyme-linked receptor protein signaling pathway blood vessel morphogenesis tube development angiogenesis sprouting angiogenesis anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis negative regulation of vascular permeability regulation of vascular permeability system process circulatory system process vascular process in circulatory system regulation of biological quality blood circulation embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development regulation of catalytic activity regulation of transferase activity cellular component biogenesis cellular component assembly activation of transmembrane receptor protein tyrosine kinase activity regulation of molecular function positive regulation of kinase activity regulation of kinase activity activation of protein kinase activity cellular component organization positive regulation of molecular function protein-containing complex assembly cellular component organization or biogenesis positive regulation of protein kinase activity positive regulation of transferase activity protein-containing complex organization positive regulation of catalytic activity regulation of protein kinase activity cell adhesion regulation of cell adhesion negative regulation of cell adhesion positive regulation of locomotion regulation of cell motility endothelial cell migration positive regulation of cell migration positive regulation of epithelial cell migration tissue migration ameboidal-type cell migration positive regulation of cell motility regulation of cell migration regulation of endothelial cell migration cell migration epithelial cell migration cell motility regulation of epithelial cell migration epithelium migration regulation of locomotion positive regulation of endothelial cell migration positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette regulation of signaling positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade positive regulation of signaling negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death protein localization to cell surface import into cell regulation of cellular component organization positive regulation of cellular component organization receptor internalization regulation of receptor internalization vesicle-mediated transport positive regulation of endocytosis positive regulation of receptor-mediated endocytosis regulation of endocytosis regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport positive regulation of receptor internalization positive regulation of transport endocytosis receptor-mediated endocytosis regulation of protein ubiquitination positive regulation of post-translational protein modification protein ubiquitination regulation of protein modification by small protein conjugation or removal positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of tumor necrosis factor production tumor necrosis factor superfamily cytokine production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction neuron apoptotic process negative regulation of neuron apoptotic process regulation of neuron apoptotic process positive regulation of cell adhesion regulation of blood vessel endothelial cell migration blood vessel endothelial cell migration positive regulation of blood vessel endothelial cell migration cell population proliferation skeletal muscle satellite cell proliferation regulation of cell population proliferation muscle cell proliferation regulation of skeletal muscle satellite cell proliferation skeletal muscle cell proliferation regulation of skeletal muscle cell proliferation striated muscle cell proliferation regulation of blood-brain barrier permeability maintenance of blood-brain barrier homeostatic process positive regulation of vascular permeability positive regulation of blood-brain barrier permeability tissue homeostasis multicellular organismal-level homeostasis anatomical structure homeostasis negative regulation of endothelial cell apoptotic process regulation of epithelial cell apoptotic process epithelial cell apoptotic process negative regulation of epithelial cell apoptotic process endothelial cell apoptotic process regulation of endothelial cell apoptotic process cell-substrate adhesion peptidyl-tyrosine modification positive regulation of peptidyl-tyrosine phosphorylation regulation of peptidyl-tyrosine phosphorylation peptidyl-tyrosine phosphorylation canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction response to organic substance response to cytokine cytokine-mediated signaling pathway macrophage migration inhibitory factor signaling pathway cellular response to cytokine stimulus cellular response to organic substance regulation of macrophage migration inhibitory factor signaling pathway regulation of cytokine-mediated signaling pathway cellular response to chemical stimulus regulation of response to cytokine stimulus	extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle cell periphery extracellular matrix external encapsulating structure collagen-containing extracellular matrix extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle cell periphery extracellular matrix external encapsulating structure collagen-containing extracellular matrix cell projection actin-based cell projection microvillus plasma membrane bounded cell projection plasma membrane membrane membrane microdomain membrane raft

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR014716	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Homologous Superfamily
A [auth X]	IPR020837	Fibrinogen, conserved site	Conserved Site
A [auth X]	IPR002181	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Domain
A [auth X]	IPR036056	Fibrinogen-like, C-terminal	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth X]	Pharos: Q15389	Hypertrophy ovarian cancer pituitary cancer breast cancer cystic fibrosis glioblastoma invasive ductal breast carcinoma lung carcinoma malignant glioma open-angle glaucoma pancreatic intraductal papillary-mucinous carcinoma breast carcinoma ductal breast carcinoma in situ lung adenocarcinoma malignant colon neoplasm Hypertrophy ovarian cancer pituitary cancer breast cancer cystic fibrosis glioblastoma invasive ductal breast carcinoma lung carcinoma malignant glioma open-angle glaucoma pancreatic intraductal papillary-mucinous carcinoma breast carcinoma ductal breast carcinoma in situ lung adenocarcinoma malignant colon neoplasm malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm lung cancer malignant ependymoma non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.