4JOL | pdb_00004jol

Complex structure of AML1-ETO NHR2 domain with HEB fragment

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PEPCK_N	e4jolA1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PEPCK_N	ECOD (v294.1)
B	PEPCK_N	e4jolB1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PEPCK_N	ECOD (v294.1)
D	PEPCK_N	e4jolD1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PEPCK_N	ECOD (v294.1)
C	PEPCK_N	e4jolC1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PEPCK_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	6.10.250.230	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	6.10.250.230	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D	6.10.250.230	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C	6.10.250.230	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	Transcription factor 12	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding cAMP response element binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein heterodimerization activity protein binding DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding cAMP response element binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein heterodimerization activity protein binding protein dimerization activity transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific SMAD binding transcription factor binding DNA-binding transcription factor binding E-box binding HMG box domain binding protein domain specific binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity bHLH transcription factor binding	developmental process cellular developmental process cell differentiation cellular process response to stimulus immune response immune system process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression developmental process cellular developmental process cell differentiation cellular process response to stimulus immune response immune system process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process muscle structure development animal organ development anatomical structure development muscle organ development multicellular organismal process regulation of developmental process regulation of cell differentiation positive regulation of neuron differentiation positive regulation of developmental process neurogenesis multicellular organism development neuron differentiation positive regulation of cell differentiation system development nervous system development generation of neurons regulation of neuron differentiation response to gonadotropin-releasing hormone response to hormone response to chemical response to endogenous stimulus response to peptide hormone response to oxygen-containing compound response to nitrogen compound RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription positive regulation of DNA-templated transcription positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen RNA polymerase II transcription regulator complex protein-containing complex nuclear protein-containing complex transcription regulator complex cytoplasm chromatin chromosome
A, B, C, D	Protein CBFA2T1	DNA binding binding nucleic acid binding transcription corepressor activity transcription regulator activity transcription coregulator activity transcription factor binding protein binding DNA-binding transcription factor binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding DNA binding binding nucleic acid binding transcription corepressor activity transcription regulator activity transcription coregulator activity transcription factor binding protein binding DNA-binding transcription factor binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process developmental process fat cell differentiation regulation of developmental process cellular developmental process negative regulation of developmental process regulation of cell differentiation negative regulation of fat cell differentiation cell differentiation negative regulation of cell differentiation regulation of fat cell differentiation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	Domain
E, F, G, H	IPR051098	Neuronal Differentiation E-box Binding Transcription Factors	Family
E, F, G, H	IPR036638	Helix-loop-helix DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR002893	Zinc finger, MYND-type	Domain
A, B, C, D	IPR003894	TAFH/NHR1	Domain
A, B, C, D	IPR013289	CBFA2T family	Family
A, B, C, D	IPR013290	Protein CBFA2T1	Family
A, B, C, D	IPR014896	NHR2-like	Domain
A, B, C, D	IPR037249	TAFH/NHR1 domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E, F, G, H	Pharos: Q99081	craniosynostosis extraskeletal myxoid chondrosarcoma TCF12-related craniosynostosis Metopic synostosis pilocytic astrocytoma psoriasis atypical teratoid rhabdoid tumor intellectual disability juvenile dermatomyositis malignant glioma oligodendroglioma astrocytic tumor Down syndrome glioblastoma isolated brachycephaly craniosynostosis extraskeletal myxoid chondrosarcoma TCF12-related craniosynostosis Metopic synostosis pilocytic astrocytoma psoriasis atypical teratoid rhabdoid tumor intellectual disability juvenile dermatomyositis malignant glioma oligodendroglioma astrocytic tumor Down syndrome glioblastoma isolated brachycephaly large cell medulloblastoma medulloblastoma ovarian cancer primitive neuroectodermal tumor trigonocephaly atrial fibrillation breast cancer hydrocephalus isolated plagiocephaly malignant ependymoma
A, B, C, D	Pharos: Q06455	acute myeloid leukemia small cell lung carcinoma malignant colon neoplasm malignant mesothelioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm astrocytic tumor pituitary cancer atypical teratoid rhabdoid tumor Small cell carcinoma of lung cancer ductal breast carcinoma in situ juvenile dermatomyositis lung adenocarcinoma acute myeloid leukemia small cell lung carcinoma malignant colon neoplasm malignant mesothelioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm astrocytic tumor pituitary cancer atypical teratoid rhabdoid tumor Small cell carcinoma of lung cancer ductal breast carcinoma in situ juvenile dermatomyositis lung adenocarcinoma malignant ependymoma malignant pancreatic neoplasm oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atopic eczema psoriasis breast cancer colorectal cancer glioblastoma large cell medulloblastoma lung cancer malignant glioma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma attention deficit hyperactivity disorder, inattentive type small cell carcinoma breast carcinoma subependymal giant cell astrocytoma invasive ductal breast carcinoma leukemia

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.