4JOD | pdb_00004jod

Crystal structure of human lysophosphatidic acid phosphatase type 6 complexed with Tris

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PH	e4jodA1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PH	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1240	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphoglycerate mutase-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00328	Histidine phosphatase superfamily (branch 2) (His_Phos_2)	Histidine phosphatase superfamily (branch 2)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Lysophosphatidic acid phosphatase type 6	phosphoric ester hydrolase activity acid phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity lysophosphatidic acid phosphatase activity	phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process glycerolipid metabolic process phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process glycerolipid metabolic process metabolic process cellular process phosphorus metabolic process lipid metabolic process developmental process cellular developmental process hemopoiesis cell differentiation anatomical structure development cell development hematopoietic progenitor cell differentiation lysobisphosphatidic acid metabolic process carbohydrate derivative metabolic process alditol phosphate metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000560	Histidine phosphatase superfamily, clade-2	Family
A	IPR029033	Histidine phosphatase superfamily	Homologous Superfamily
A	IPR050645	Histidine Acid Phosphatase	Family
A	IPR033379	Histidine acid phosphatase active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9NPH0	atrial fibrillation cystic fibrosis lung cancer malignant glioma pancreatic intraductal papillary-mucinous neoplasm thrombocytopenia-absent radius syndrome chromosome 1q21.1 deletion syndrome glioblastoma malignant colon neoplasm malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia cutaneous lupus erythematosus interstitial cystitis malignant ependymoma ovarian cancer atrial fibrillation cystic fibrosis lung cancer malignant glioma pancreatic intraductal papillary-mucinous neoplasm thrombocytopenia-absent radius syndrome chromosome 1q21.1 deletion syndrome glioblastoma malignant colon neoplasm malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia cutaneous lupus erythematosus interstitial cystitis malignant ependymoma ovarian cancer subependymal giant cell astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.