Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | CBM_6 | e4je0B1 | A: alpha arrays | X: PBZ domain | H: PBZ domain | T: PBZ domain | F: CBM_6 | ECOD (v295.2) |
| B | Dicer_dsRBD | e4je0B3 | A: alpha arrays | X: DEATH domain | H: PH domain-like | T: PH domain-like | F: Dicer_dsRBD | ECOD (v295.2) |
| A | CBM_6 | e4je0A1 | A: alpha arrays | X: PBZ domain | H: PBZ domain | T: PBZ domain | F: CBM_6 | ECOD (v295.2) |
| A | MatP | e4je0A2 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: double psi | F: MatP | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.60.40.1280 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
| B | 2.60.40.1290 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
| A | 2.60.40.1280 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
| A | 2.60.40.1290 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR033764 | SD-repeat containing protein, B domain | Domain | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR005877 | YSIRK Gram-positive signal peptide | Domain | |
| IPR008966 | Adhesion domain superfamily | Homologous Superfamily | |
| IPR011252 | Fibrogen-binding domain 1 | Homologous Superfamily | |
| IPR050972 | SDr-like | Unknown | |
| IPR019931 | LPXTG cell wall anchor motif | Conserved Site | |
| IPR041171 | SDR-like Ig domain | Domain |














