4JC6 | pdb_00004jc6

Mercury activation of the plant aquaporin SoPIP2;1 - structural and functional characterization

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H [auth N]	d4jc6n_	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	automated matches	automated matches	Spinach (Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
G [auth L]	d4jc6l_	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	automated matches	automated matches	Spinach (Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
F [auth J]	d4jc6j_	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	automated matches	automated matches	Spinach (Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
E [auth H]	d4jc6h_	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	automated matches	automated matches	Spinach (Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
D	d4jc6d_	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	automated matches	automated matches	Spinach (Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
C	d4jc6c_	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	automated matches	automated matches	Spinach (Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
B	d4jc6b_	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	automated matches	automated matches	Spinach (Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
A	d4jc6a_	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	automated matches	automated matches	Spinach (Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth N]	SCOP2B Superfamily	Aquaporin-like	8072772	3000508	SCOP2B (2022-06-29)
G [auth L]	SCOP2B Superfamily	Aquaporin-like	8072772	3000508	SCOP2B (2022-06-29)
F [auth J]	SCOP2B Superfamily	Aquaporin-like	8072772	3000508	SCOP2B (2022-06-29)
E [auth H]	SCOP2B Superfamily	Aquaporin-like	8072772	3000508	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Aquaporin-like	8072772	3000508	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aquaporin-like	8072772	3000508	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aquaporin-like	8072772	3000508	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aquaporin-like	8072772	3000508	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth N]	Nuc_deoxyrib_tr	e4jc6N1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (v294.1)
G [auth L]	Nuc_deoxyrib_tr	e4jc6L1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (v294.1)
F [auth J]	Nuc_deoxyrib_tr	e4jc6J1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (v294.1)
E [auth H]	Nuc_deoxyrib_tr	e4jc6H1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (v294.1)
D	Nuc_deoxyrib_tr	e4jc6D1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (v294.1)
C	Nuc_deoxyrib_tr	e4jc6C1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (v294.1)
B	Nuc_deoxyrib_tr	e4jc6B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (v294.1)
A	Nuc_deoxyrib_tr	e4jc6A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H [auth N]	1.20.1080.10	Mainly Alpha	Up-down Bundle	Glycerol uptake facilitator protein	Glycerol uptake facilitator protein.	CATH (4.3.0)
G [auth L]	1.20.1080.10	Mainly Alpha	Up-down Bundle	Glycerol uptake facilitator protein	Glycerol uptake facilitator protein.	CATH (4.3.0)
F [auth J]	1.20.1080.10	Mainly Alpha	Up-down Bundle	Glycerol uptake facilitator protein	Glycerol uptake facilitator protein.	CATH (4.3.0)
E [auth H]	1.20.1080.10	Mainly Alpha	Up-down Bundle	Glycerol uptake facilitator protein	Glycerol uptake facilitator protein.	CATH (4.3.0)
D	1.20.1080.10	Mainly Alpha	Up-down Bundle	Glycerol uptake facilitator protein	Glycerol uptake facilitator protein.	CATH (4.3.0)
C	1.20.1080.10	Mainly Alpha	Up-down Bundle	Glycerol uptake facilitator protein	Glycerol uptake facilitator protein.	CATH (4.3.0)
B	1.20.1080.10	Mainly Alpha	Up-down Bundle	Glycerol uptake facilitator protein	Glycerol uptake facilitator protein.	CATH (4.3.0)
A	1.20.1080.10	Mainly Alpha	Up-down Bundle	Glycerol uptake facilitator protein	Glycerol uptake facilitator protein.	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E [auth H], A, B, C, D, E [auth H], F [auth J], G [auth L], H [auth N]	PF00230	Major intrinsic protein (MIP)	Major intrinsic protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E [auth H], A, B, C, D, E [auth H], F [auth J], G [auth L], H [auth N]	Aquaporin	passive transmembrane transporter activity water transmembrane transporter activity channel activity transporter activity transmembrane transporter activity water channel activity identical protein binding protein binding binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E [auth H], A, B, C, D, E [auth H], F [auth J], G [auth L], H [auth N]	IPR022357	Major intrinsic protein, conserved site	Conserved Site
A, B, C, D, E [auth H], A, B, C, D, E [auth H], F [auth J], G [auth L], H [auth N]	IPR034294	Aquaporin transporter	Family
A, B, C, D, E [auth H], A, B, C, D, E [auth H], F [auth J], G [auth L], H [auth N]	IPR023271	Aquaporin-like	Homologous Superfamily
A, B, C, D, E [auth H], A, B, C, D, E [auth H], F [auth J], G [auth L], H [auth N]	IPR000425	Major intrinsic protein	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E [auth H] A, B, C, D, E [auth H], F [auth J], G [auth L], H [auth N]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E [auth H] A, B, C, D, E [auth H], F [auth J], G [auth L], H [auth N]	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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