4J8Q | pdb_00004j8q

Crystal structure of a NigD-like protein (BF0700) from Bacteroides fragilis NCTC 9343 at 2.50 A resolution

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyCTD of NigD-like 8046953 4005383 SCOP2 (2022-06-29)
ASCOP2 FamilyNTD of NigD-like 8047779 4005812 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCTD of NigD-like 8052335 3002106 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyBacterial enterotoxins 8052334 3000434 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ANigD_Ne4j8qA2 A: beta barrelsX: OB-foldH: OB domain in putative lipoprotein BF3042-related proteins (From Topology)T: OB domain in putative lipoprotein BF3042-related proteinsF: NigD_NECOD (1.6)
ANigD_Ce4j8qA1 A: beta sandwichesX: Ig-like domain in putative lipoprotein BF3042-related proteins (From Topology)H: Ig-like domain in putative lipoprotein BF3042-related proteins (From Topology)T: Ig-like domain in putative lipoprotein BF3042-related proteinsF: NigD_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.50.500 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) NigD-like N-terminal OB domainCATH (4.3.0)
A2.60.40.2370 Mainly Beta Sandwich Immunoglobulin-like NigD-like, C-terminal beta sandwich domainCATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR038143NigD-like, C-terminal domain superfamilyHomologous Superfamily
IPR038179NigD-like, N-terminal domain superfamilyHomologous Superfamily
IPR035376NigD-like, C-terminal domainDomain
IPR024299NigD-like N-terminal OB domainDomain