4IYQ | pdb_00004iyq

Crystal structure of divalent ion tolerance protein CutA1 from Ehrlichia chaffeensis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d4iyqc1	Alpha and beta proteins (a+b)	Ferredoxin-like	GlnB-like	automated matches	automated matches	(Ehrlichia chaffeensis str. Arkansas ) [TaxId: 205920 ],	SCOPe (2.08)
C	d4iyqc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Ehrlichia chaffeensis str. Arkansas ) [TaxId: 205920 ],	SCOPe (2.08)
B	d4iyqb1	Alpha and beta proteins (a+b)	Ferredoxin-like	GlnB-like	automated matches	automated matches	(Ehrlichia chaffeensis str. Arkansas ) [TaxId: 205920 ],	SCOPe (2.08)
B	d4iyqb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Ehrlichia chaffeensis str. Arkansas ) [TaxId: 205920 ],	SCOPe (2.08)
A	d4iyqa1	Alpha and beta proteins (a+b)	Ferredoxin-like	GlnB-like	automated matches	automated matches	(Ehrlichia chaffeensis str. Arkansas ) [TaxId: 205920 ],	SCOPe (2.08)
A	d4iyqa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Ehrlichia chaffeensis str. Arkansas ) [TaxId: 205920 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	GlnB-like	8063682	3001165	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GlnB-like	8063682	3001165	SCOP2B (2022-06-29)
A	SCOP2 Family	Divalent ion tolerance proteins CutA (CutA1)	8063681	4002632	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	GlnB-like	8063682	3001165	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C		e4iyqC2	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: PCI	F:	ECOD (20:10:01)
B		e4iyqB2	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: PCI	F:	ECOD (20:10:01)
A		e4iyqA1	A: Alpha-beta plaits	X: Family B DNA polymerase insertion domain	H: Family B DNA polymerase insertion domain	T: RimK	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.70.120	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	3.30.70.120	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
A	3.30.70.120	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF03091	CutA1 divalent ion tolerance protein (CutA1)	CutA1 divalent ion tolerance protein	Several gene loci with a possible involvement in cellular tolerance to copper have been identified [1]. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations oth ...	Several gene loci with a possible involvement in cellular tolerance to copper have been identified [1]. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognised structural motifs [2]. This family also contains putative proteins from eukaryotes (human and Drosophila).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Divalent ion tolerance protein CutA1	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding	response to stimulus response to metal ion response to chemical	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR004323	Divalent ion tolerance protein, CutA	Family
A, B, C	IPR015867	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	Homologous Superfamily
A, B, C	IPR011322	Nitrogen regulatory PII-like, alpha/beta	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.