4IWM | pdb_00004iwm

Crystal Structure of the Conserved Hypothetical Protein MJ0927 from Methanocaldococcus jannaschii (in P21 form)

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Fd4iwmf_ Alpha and beta proteins (a/b) NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like automated matches automated matches (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], SCOPe (2.08)
Ed4iwme_ Alpha and beta proteins (a/b) NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like automated matches automated matches (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], SCOPe (2.08)
Dd4iwmd_ Alpha and beta proteins (a/b) NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like automated matches automated matches (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], SCOPe (2.08)
Cd4iwmc_ Alpha and beta proteins (a/b) NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like automated matches automated matches (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], SCOPe (2.08)
Bd4iwmb_ Alpha and beta proteins (a/b) NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like automated matches automated matches (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], SCOPe (2.08)
Ad4iwma_ Alpha and beta proteins (a/b) NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like automated matches automated matches (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyNIF3-like 8076253 3001101 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyNIF3-like 8076253 3001101 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyNIF3-like 8076253 3001101 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyNIF3-like 8076253 3001101 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNIF3-like 8076253 3001101 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyNIF3-like 8076253 3001101 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FEryCIII-like_Ne4iwmF1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: EryCIII-like_NECOD (v294.1)
EEryCIII-like_Ne4iwmE1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: EryCIII-like_NECOD (v294.1)
DEryCIII-like_Ne4iwmD1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: EryCIII-like_NECOD (v294.1)
CEryCIII-like_Ne4iwmC1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: EryCIII-like_NECOD (v294.1)
BEryCIII-like_Ne4iwmB1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: EryCIII-like_NECOD (v294.1)
AEryCIII-like_Ne4iwmA1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: EryCIII-like_NECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase Chain: A, domain 1CATH (4.3.0)
E3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase Chain: A, domain 1CATH (4.3.0)
D3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase Chain: A, domain 1CATH (4.3.0)
C3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase Chain: A, domain 1CATH (4.3.0)
B3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase Chain: A, domain 1CATH (4.3.0)
A3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase Chain: A, domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01784Duf34/NIF3 (NGG1p interacting factor 3) (DUF34_NIF3)Duf34/NIF3 (NGG1p interacting factor 3)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
UPF0135 protein MJ0927 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR002678DUF34/NIF3Family
A, B, C, D, E
IPR036069DUF34/NIF3 superfamilyHomologous Superfamily