4IVF

Crystal structure of glutathione transferase homolog from Lodderomyces elongisporus, target EFI-501753, with two GSH per subunit

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4ivfa1 Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Ad4ivfa2 Artifacts Tags Tags Tags C-terminal Tags Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Bd4ivfb2 All alpha proteins GST C-terminal domain-like GST C-terminal domain-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Bd4ivfb1 Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Cd4ivfc2 All alpha proteins GST C-terminal domain-like GST C-terminal domain-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Cd4ivfc1 Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Cd4ivfc3 Artifacts Tags Tags Tags C-terminal Tags Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Dd4ivfd2 All alpha proteins GST C-terminal domain-like GST C-terminal domain-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Dd4ivfd1 Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Ed4ivfe2 All alpha proteins GST C-terminal domain-like GST C-terminal domain-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Ed4ivfe1 Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Ed4ivfe3 Artifacts Tags Tags Tags C-terminal Tags Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Fd4ivff2 All alpha proteins GST C-terminal domain-like GST C-terminal domain-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Fd4ivff1 Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Fd4ivff3 Artifacts Tags Tags Tags C-terminal Tags Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Gd4ivfg2 All alpha proteins GST C-terminal domain-like GST C-terminal domain-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Gd4ivfg1 Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Gd4ivfg3 Artifacts Tags Tags Tags C-terminal Tags Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Hd4ivfh2 All alpha proteins GST C-terminal domain-like GST C-terminal domain-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)
Hd4ivfh1 Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like automated matches automated matches Yeast (Lodderomyces elongisporus NRRL YB-4239 ) [TaxId: 379508 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGST_C_3e4ivfA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
AGST_Ne4ivfA2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: GST_NECOD (1.6)
BGST_C_3e4ivfB1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
BGST_Ne4ivfB2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: GST_NECOD (1.6)
CGST_C_3e4ivfC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
CGST_Ne4ivfC2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: GST_NECOD (1.6)
DGST_C_3e4ivfD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
DGST_Ne4ivfD2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: GST_NECOD (1.6)
EGST_C_3e4ivfE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
EGST_Ne4ivfE2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: GST_NECOD (1.6)
FGST_C_3e4ivfF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
FGST_Ne4ivfF2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: GST_NECOD (1.6)
GGST_C_3e4ivfG1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
GGST_Ne4ivfG2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: GST_NECOD (1.6)
HGST_C_3e4ivfH1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
HGST_Ne4ivfH2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: GST_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (4.3.0)
A1.20.1050.10 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)
B3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (4.3.0)
B1.20.1050.10 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)
C3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (4.3.0)
C1.20.1050.10 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)
D3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (4.3.0)
D1.20.1050.10 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)
E3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (4.3.0)
E1.20.1050.10 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)
F3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (4.3.0)
F1.20.1050.10 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)
G3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (4.3.0)
G1.20.1050.10 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)
H3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (4.3.0)
H1.20.1050.10 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00043Glutathione S-transferase, C-terminal domain (GST_C)Glutathione S-transferase, C-terminal domainGST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins ...GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain [1]. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes [2].
Domain
A, B, C, D, E
PF02798Glutathione S-transferase, N-terminal domain (GST_N)Glutathione S-transferase, N-terminal domainFunction: conjugation of reduced glutathione to a variety of targets. Also included in the alignment, but not GSTs: S-crystallins from squid (similarity to GST previously noted); eukaryotic elongation factors 1-gamma (not known to have GST activity a ...Function: conjugation of reduced glutathione to a variety of targets. Also included in the alignment, but not GSTs: S-crystallins from squid (similarity to GST previously noted); eukaryotic elongation factors 1-gamma (not known to have GST activity and similarity not previously recognised); HSP26 family of stress-related proteins including auxin-regulated proteins in plants and stringent starvation proteins in E. coli (not known to have GST activity and similarity not previously recognised). The glutathione molecule binds in a cleft between the N- and C-terminal domains - the catalytically important residues are proposed to reside in the N-terminal domain [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR004046Glutathione S-transferase, C-terminalDomain
A, B, C, D, E
IPR010987Glutathione S-transferase, C-terminal-likeDomain
A, B, C, D, E
IPR036282Glutathione S-transferase, C-terminal domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR004045Glutathione S-transferase, N-terminalDomain
A, B, C, D, E
IPR036249Thioredoxin-like superfamilyHomologous Superfamily