4IQF | pdb_00004iqf

Crystal Structure of Methyionyl-tRNA Formyltransferase from Bacillus anthracis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4iqfd2	All beta proteins	FMT C-terminal domain-like	FMT C-terminal domain-like	automated matches	automated matches	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
D	d4iqfd1	Alpha and beta proteins (a/b)	Formyltransferase	Formyltransferase	automated matches	automated matches	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
D	d4iqfd3	Artifacts	Tags	Tags	Tags	N-terminal Tags	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
C	d4iqfc2	All beta proteins	FMT C-terminal domain-like	FMT C-terminal domain-like	automated matches	automated matches	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
C	d4iqfc1	Alpha and beta proteins (a/b)	Formyltransferase	Formyltransferase	automated matches	automated matches	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
C	d4iqfc3	Artifacts	Tags	Tags	Tags	N-terminal Tags	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
B	d4iqfb2	All beta proteins	FMT C-terminal domain-like	FMT C-terminal domain-like	automated matches	automated matches	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
B	d4iqfb1	Alpha and beta proteins (a/b)	Formyltransferase	Formyltransferase	automated matches	automated matches	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
B	d4iqfb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
A	d4iqfa2	All beta proteins	FMT C-terminal domain-like	FMT C-terminal domain-like	automated matches	automated matches	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
A	d4iqfa1	Alpha and beta proteins (a/b)	Formyltransferase	Formyltransferase	automated matches	automated matches	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)
A	d4iqfa3	Artifacts	Tags	Tags	Tags	N-terminal Tags	anthrax,anthrax bacterium (Bacillus anthracis ) [TaxId: 1392 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	SmpA_OmlA	e4iqfD1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: SmpA_OmlA	ECOD (v294.1)
C	LSM	e4iqfC1	A: a/b three-layered sandwiches	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: LSM	ECOD (v294.1)
B	SmpA_OmlA	e4iqfB1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: SmpA_OmlA	ECOD (v294.1)
A	SmpA_OmlA	e4iqfA1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: SmpA_OmlA	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Formyl transferase, N-terminal domain	CATH (4.3.0)
D	3.10.25.10	Alpha Beta	Roll	Methionyl-tRNA Fmet Formyltransferase	Chain A, domain 2	CATH (4.3.0)
C	3.40.50.170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Formyl transferase, N-terminal domain	CATH (4.3.0)
C	3.10.25.10	Alpha Beta	Roll	Methionyl-tRNA Fmet Formyltransferase	Chain A, domain 2	CATH (4.3.0)
B	3.40.50.170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Formyl transferase, N-terminal domain	CATH (4.3.0)
B	3.10.25.10	Alpha Beta	Roll	Methionyl-tRNA Fmet Formyltransferase	Chain A, domain 2	CATH (4.3.0)
A	3.40.50.170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Formyl transferase, N-terminal domain	CATH (4.3.0)
A	3.10.25.10	Alpha Beta	Roll	Methionyl-tRNA Fmet Formyltransferase	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02911	Formyl transferase, C-terminal domain (Formyl_trans_C)	Formyl transferase, C-terminal domain		Domain
A, B, C, D	PF00551	Formyl transferase (Formyl_trans_N)	Formyl transferase	This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces ...	This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Methionyl-tRNA formyltransferase	catalytic activity, acting on RNA methionyl-tRNA formyltransferase activity transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid catalytic activity, acting on a tRNA transferase activity hydroxymethyl-, formyl- and related transferase activity catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR037022	Formyl transferase, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR001555	Phosphoribosylglycinamide formyltransferase, active site	Active Site
A, B, C, D	IPR044135	Methionyl-tRNA formyltransferase, C-terminal domain	Domain
A, B, C, D	IPR005794	Methionyl-tRNA formyltransferase	Family
A, B, C, D	IPR002376	Formyl transferase, N-terminal	Domain
A, B, C, D	IPR005793	Formyl transferase, C-terminal	Domain
A, B, C, D	IPR041711	Methionyl-tRNA formyltransferase, N-terminal domain	Domain
A, B, C, D	IPR036477	Formyl transferase, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR011034	Formyl transferase-like, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.