4IND | pdb_00004ind

The Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T	Peptidase_M49	e4indT7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
S	Peptidase_M49	e4indS7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
R	Peptidase_M49	e4indR7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
Q	Peptidase_M49	e4indQ7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
P	Peptidase_M49	e4indP7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
O	Peptidase_M49	e4indO7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
N	Peptidase_M49	e4indN7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
M	Peptidase_M49	e4indM7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
L	Peptidase_M49	e4indL7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
K	Peptidase_M49	e4indK7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
J	Peptidase_M49	e4indJ7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
I	Peptidase_M49	e4indI7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
H	Peptidase_M49	e4indH7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
G	Peptidase_M49	e4indG7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
F	Peptidase_M49	e4indF7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
E	Peptidase_M49	e4indE7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
D	Peptidase_M49	e4indD7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
C	Peptidase_M49	e4indC7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
B	Peptidase_M49	e4indB7	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
A	LSM	e4indA3	A: a/b three-layered sandwiches	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: LSM	ECOD (v294.1)
A	STIV_turret_2nd	e4indA6	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: STIV_turret_2nd	ECOD (v294.1)
A	Catalase-rel	e4indA7	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Catalase-rel	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
T	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
T	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
T	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
S	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
S	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
S	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
R	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
R	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
R	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
Q	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
Q	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
Q	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
P	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
P	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
P	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
O	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
O	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
O	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
N	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
N	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
N	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
M	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
M	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
M	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
L	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
L	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
L	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
K	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
K	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
K	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
J	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
J	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
J	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
I	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
I	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
I	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
H	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
H	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
H	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
G	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
G	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
G	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
F	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
F	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
F	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
E	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
E	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
E	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
D	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
D	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
D	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
C	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
C	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
C	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
B	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
B	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
B	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
A	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
A	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
A	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF21879	C381 turret protein Nucleoplasmin-like/VP domain (STIV_turret_3rd)	C381 turret protein Nucleoplasmin-like/VP domain	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein third jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions o ...	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein third jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions of the membrane and various protein components involved. The turret protein is apposed on the penton base C-terminal jelly-roll ring and forms a pentamer consisting of three consecutive layers of jelly-rolls, with each jelly-roll exhibiting different orientations. The interior of the C381 pentamer harbors two rather large cavities, which exhibit an overall positive electrostatic potential, suggesting that the turrets may act as STIV receptor-binding proteins carrying out recognition and attachment to the host receptors. The turret protein shares similarity with many carbohydrate-binding modules as well as domains involved in protein-protein interactions.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF21878	C381 turret protein 1st galactose-binding domain-like (STIV_turret_1st)	C381 turret protein 1st galactose-binding domain-like	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein first jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions o ...	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein first jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions of the membrane and various protein components involved. The turret protein is apposed on the penton base C-terminal jelly-roll ring and forms a pentamer consisting of three consecutive layers of jelly-rolls, with each jelly-roll exhibiting different orientations. The interior of the C381 pentamer harbors two rather large cavities, which exhibit an overall positive electrostatic potential, suggesting that the turrets may act as STIV receptor-binding proteins carrying out recognition and attachment to the host receptors. The turret protein shares similarity with many carbohydrate-binding modules as well as domains involved in protein-protein interactions [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF21876	C381 turret protein 2nd galactose-binding domain-like (STIV_turret_2nd)	C381 turret protein 2nd galactose-binding domain-like	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein second jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions ...	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein second jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions of the membrane and various protein components involved. The turret protein is apposed on the penton base C-terminal jelly-roll ring and forms a pentamer consisting of three consecutive layers of jelly-rolls, with each jelly-roll exhibiting different orientations. The interior of the C381 pentamer harbors two rather large cavities, which exhibit an overall positive electrostatic potential, suggesting that the turrets may act as STIV receptor-binding proteins carrying out recognition and attachment to the host receptors. The turret protein shares similarity with many carbohydrate-binding modules as well as domains involved in protein-protein interactions.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR054072	C381 turret protein, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR054073	C381 turret protein, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR054070	C381 turret protein, middle domain	Domain