4IIW | pdb_00004iiw

2.6 Angstrom Crystal Structure of Putative yceG-like Protein lmo1499 from Listeria monocytogenes

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Germination-specific lytic tansglycosylase SleB, catalytic domain-like	8091110	3002487	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	LysM domain-like	8091103	3001938	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	LysM domain-like	8091104	3001938	SCOP2B (2022-06-29)
A	SCOP2 Family	YceG, N-terminal domain-like	8050652	4006990	SCOP2 (2022-06-29)
A	SCOP2 Family	YceG, N-terminal domain-like	8091106	4006990	SCOP2 (2022-06-29)
A	SCOP2 Family	YceG, C-terminal domain-like	8091108	4007724	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	LysM domain-like	8091103	3001938	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	LysM domain-like	8091104	3001938	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Germination-specific lytic tansglycosylase SleB, catalytic domain-like	8091110	3002487	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e4iiwB1	A: a/b three-layered sandwiches	X: RuvA-C	H: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	T: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	F:	ECOD (v294.1)
B	YceG	e4iiwB3	A: a/b three-layered sandwiches	X: RuvA-C	H: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	T: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	F: YceG	ECOD (v294.1)
A	Acetyltransf_1	e4iiwA4	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Acetyltransf_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1490.480	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
A	3.30.1490.480	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02618	YceG-like family (YceG)	YceG-like family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Lmo1499 protein	peptidoglycan lytic transglycosylase activity peptidoglycan muralytic activity lytic endotransglycosylase activity lyase activity catalytic activity carbon-oxygen lyase activity, acting on polysaccharides carbon-oxygen lyase activity	carbohydrate derivative biosynthetic process peptidoglycan-based cell wall biogenesis cell wall organization or biogenesis glycosaminoglycan metabolic process carbohydrate derivative metabolic process macromolecule biosynthetic process cellular component biogenesis peptidoglycan biosynthetic process cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process aminoglycan metabolic process peptidoglycan metabolic process aminoglycan biosynthetic process carbohydrate derivative biosynthetic process peptidoglycan-based cell wall biogenesis cell wall organization or biogenesis glycosaminoglycan metabolic process carbohydrate derivative metabolic process macromolecule biosynthetic process cellular component biogenesis peptidoglycan biosynthetic process cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process aminoglycan metabolic process peptidoglycan metabolic process aminoglycan biosynthetic process cellular process metabolic process glycosaminoglycan biosynthetic process cellular component organization or biogenesis macromolecule metabolic process cell wall macromolecule metabolic process cellular component organization cell wall organization external encapsulating structure organization	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR003770	Endolytic murein transglycosylase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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