4IDX | pdb_00004idx

hexameric crystal structure of Schmallenberg virus nucleoprotein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089910	3002401	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	PepMV Coat protein-like	8089910	3002401	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	PepMV Coat protein-like	8089910	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Bunya_nucleocap	e4idxC1	A: alpha complex topology	X: Leanyer virus nucleoprotein-related (From Topology)	H: Leanyer virus nucleoprotein-related (From Topology)	T: Leanyer virus nucleoprotein-related	F: Bunya_nucleocap	ECOD (1.6)
B [auth A]	Bunya_nucleocap	e4idxA1	A: alpha complex topology	X: Leanyer virus nucleoprotein-related (From Topology)	H: Leanyer virus nucleoprotein-related (From Topology)	T: Leanyer virus nucleoprotein-related	F: Bunya_nucleocap	ECOD (1.6)
A [auth B]	Bunya_nucleocap	e4idxB1	A: alpha complex topology	X: Leanyer virus nucleoprotein-related (From Topology)	H: Leanyer virus nucleoprotein-related (From Topology)	T: Leanyer virus nucleoprotein-related	F: Bunya_nucleocap	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
C	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
B [auth A]	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
B [auth A]	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
A [auth B]	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
A [auth B]	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C	Nucleocapsid protein	RNA binding binding nucleic acid binding	-	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C	IPR043011	Bunyavirus nucleocapsid (N) , C-terminal domain	Homologous Superfamily
A [auth B], B [auth A], C	IPR043012	Bunyavirus nucleocapsid (N) , N-terminal domain	Homologous Superfamily
A [auth B], B [auth A], C	IPR001784	Bunyavirus nucleocapsid (N) protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.