Crystal Structure of DesR, a beta-glucosidase from Streptomyces venezuelae in complex with D-glucose.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | THUMP | e4i3gB2 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: THUMP | ECOD (v294.1) |
| B | YadA_stalk | e4i3gB5 | A: a/b three-layered sandwiches | X: SMI1/KNR4-like | H: SMI1/KNR4-like | T: SMI1/KNR4-like | F: YadA_stalk | ECOD (v294.1) |
| A | Fn3-like | e4i3gA2 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Fn3-like | ECOD (v294.1) |
| A | THUMP | e4i3gA4 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: THUMP | ECOD (v294.1) |
| A | YadA_stalk | e4i3gA5 | A: a/b three-layered sandwiches | X: SMI1/KNR4-like | H: SMI1/KNR4-like | T: SMI1/KNR4-like | F: YadA_stalk | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.20.20.300 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycoside hydrolase, family 3, N-terminal domain | CATH (4.3.0) |
| B | 3.40.50.1700 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Glycoside hydrolase family 3 C-terminal domain | CATH (4.3.0) |
| B | 2.60.120.380 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| A | 3.20.20.300 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycoside hydrolase, family 3, N-terminal domain | CATH (4.3.0) |
| A | 3.40.50.1700 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Glycoside hydrolase family 3 C-terminal domain | CATH (4.3.0) |
| A | 2.60.120.380 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Beta-glucosidase | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR050288 | Cellulose-degrading glycosyl hydrolase 3 | Family | |
| IPR001764 | Glycoside hydrolase, family 3, N-terminal | Domain | |
| IPR036962 | Glycoside hydrolase, family 3, N-terminal domain superfamily | Homologous Superfamily | |
| IPR011658 | PA14 domain | Domain | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
| IPR026891 | Fibronectin type III-like domain | Domain | |
| IPR036881 | Glycoside hydrolase family 3 C-terminal domain superfamily | Homologous Superfamily | |
| IPR002772 | Glycoside hydrolase family 3 C-terminal domain | Domain |
