The crystal structure of the DNA binding domain of vIRF-1 from the oncogenic KSHV
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | IRF | e4hlxD2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: IRF | ECOD (1.6) |
| C | IRF | e4hlxC2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: IRF | ECOD (1.6) |
| B | IRF | e4hlxB2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: IRF | ECOD (1.6) |
| A | IRF | e4hlxA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: IRF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.2.0) |
| C | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.2.0) |
| B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.2.0) |
| A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.2.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR001346 | Interferon regulatory factor, DNA-binding domain | Domain | |
| IPR017855 | SMAD-like domain superfamily | Homologous Superfamily | |
| IPR008984 | SMAD/FHA domain superfamily | Homologous Superfamily | |
| IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
| IPR019471 | Interferon regulatory factor-3 | Domain | |
| IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |














