4HL6 | pdb_00004hl6

YfdE from Escherichia coli

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d4hl6f_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
E	d4hl6e_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d4hl6d_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d4hl6c_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d4hl6b_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d4hl6a_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)
A	SCOP2 Family	CoA-transferase family III (CaiB/BaiF)	8061774	4000567	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	EryCIII-like_N	e4hl6F1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: EryCIII-like_N	ECOD (v294.1)
E	EryCIII-like_N	e4hl6E1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: EryCIII-like_N	ECOD (v294.1)
D	EryCIII-like_N	e4hl6D1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: EryCIII-like_N	ECOD (v294.1)
C	EryCIII-like_N	e4hl6C1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: EryCIII-like_N	ECOD (v294.1)
B	Pkinase	e4hl6B1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Pkinase	ECOD (v294.1)
A	EryCIII-like_N	e4hl6A1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: EryCIII-like_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
F	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
E	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
E	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
D	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
D	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
C	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
C	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
B	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
B	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
A	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
A	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF02515	CoA-transferase family III (CoA_transf_3)	CoA-transferase family III	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Uncharacterized protein YfdE	acetyl-CoA:oxalate CoA-transferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR023606	CoA-transferase family III domain 1 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR050483	CoA-transferase III domain-containing protein	Family
A, B, C, D, E A, B, C, D, E, F	IPR044855	CoA-transferase family III domain 3 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR003673	CoA-transferase family III	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.