Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4hhha2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
Ad4hhha1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
Bd4hhhb2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
Bd4hhhb1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
Cd4hhhc2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
Cd4hhhc1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
Dd4hhhd2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
Dd4hhhd1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
G [auth U]d4hhhu_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
E [auth S]d4hhhs_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
F [auth T]d4hhht_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)
H [auth V]d4hhhv_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit automated matches (Pisum sativum ) [TaxId: 3888 ]SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth U]SCOP2B SuperfamilyRuBisCO small subunit8069967 3001622 SCOP2B (2022-02-25)
E [auth S]SCOP2 FamilyRuBisCO small subunit8069966 4001455 SCOP2 (2022-02-25)
E [auth S]SCOP2 SuperfamilyRuBisCO small subunit8069967 3001622 SCOP2 (2022-02-25)
F [auth T]SCOP2B SuperfamilyRuBisCO small subunit8069967 3001622 SCOP2B (2022-02-25)
H [auth V]SCOP2B SuperfamilyRuBisCO small subunit8069967 3001622 SCOP2B (2022-02-25)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARuBisCO_large_Ne4hhhA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee4hhhA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
BRuBisCO_large_Ne4hhhB4 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
BRuBisCO_largee4hhhB3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
CRuBisCO_large_Ne4hhhC4 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
CRuBisCO_largee4hhhC3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
DRuBisCO_large_Ne4hhhD4 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
DRuBisCO_largee4hhhD3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
G [auth U]RuBisCO_smalle4hhhU1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
E [auth S]RuBisCO_smalle4hhhS1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
F [auth T]RuBisCO_smalle4hhhT1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
H [auth V]RuBisCO_smalle4hhhV1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.2.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.2.0)
B3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.2.0)
B3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.2.0)
C3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.2.0)
C3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.2.0)
D3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.2.0)
D3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.2.0)
G [auth U]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.2.0)
E [auth S]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.2.0)
F [auth T]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.2.0)
H [auth V]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
A, B, C, D PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
A, B, C, D PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
E [auth S],
F [auth T],
G [auth U],
H [auth V]
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain