4HC9 | pdb_00004hc9

DNA binding by GATA transcription factor-complex 3

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GATA	e4hc9A3	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: GATA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00320	GATA zinc finger (GATA)	GATA zinc finger	This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth Z]	DNA (5'-D(APAPGPGPTPTPAPTPCPTPCPTPGPAPTPTPTPAPGPG)-3')	-	-	-
B [auth Y]	DNA (5'-D(TPTPCPCPTPAPAPAPTPCPAPGPAPGPAPTPAPAPCPC)-3')	-	-	-
A	Trans-acting T-cell-specific transcription factor GATA-3	DNA binding binding nucleic acid binding protein binding HMG box domain binding protein domain specific binding histone methyltransferase binding enzyme binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding binding nucleic acid binding protein binding HMG box domain binding protein domain specific binding histone methyltransferase binding enzyme binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity transcription factor binding transcription coregulator binding transcription coactivator binding E-box binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding signaling receptor binding cytokine receptor binding growth factor receptor binding interleukin-2 receptor binding identical protein binding DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription repressor activity RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	developmental process multicellular organism development multicellular organismal process skeletal system development connective tissue development anatomical structure development animal organ development tissue development cartilage development system development ear development sensory organ development inner ear development cochlea development developmental process multicellular organism development multicellular organismal process skeletal system development connective tissue development anatomical structure development animal organ development tissue development cartilage development system development ear development sensory organ development inner ear development cochlea development response to stimulus response to chemical response to xenobiotic stimulus regulation of cellular process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process regulation of interleukin-5 production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process interleukin-5 production positive regulation of cellular process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process positive regulation of interleukin-5 production cellular developmental process hemopoiesis cell activation cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation leukocyte activation T cell activation immune system process cell differentiation lymphoid progenitor cell differentiation T cell differentiation pro-T cell differentiation leukocyte differentiation hematopoietic progenitor cell differentiation cellular response to stimulus embryonic epithelial tube formation mesonephric epithelium development kidney epithelium development nephron tubule morphogenesis negative regulation of biological process fibroblast growth factor receptor signaling pathway involved in ureteric bud formation regulation of signal transduction tube formation cell surface receptor protein tyrosine kinase signaling pathway cell communication epithelial tube formation tube morphogenesis animal organ morphogenesis signal transduction nephron development regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation epithelium development mesonephric tubule formation regulation of cellular response to growth factor stimulus embryonic morphogenesis negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation regulation of response to stimulus fibroblast growth factor receptor signaling pathway ureteric bud formation cellular response to fibroblast growth factor stimulus renal tubule morphogenesis mesonephric tubule development regulation of fibroblast growth factor receptor signaling pathway response to fibroblast growth factor cellular response to growth factor stimulus nephron morphogenesis signaling negative regulation of signaling nephron epithelium morphogenesis negative regulation of cellular response to growth factor stimulus nephron tubule development embryo development negative regulation of cell communication renal system development cellular response to endogenous stimulus ureteric bud morphogenesis nephron tubule formation negative regulation of cellular process renal tubule development epithelial tube morphogenesis enzyme-linked receptor protein signaling pathway negative regulation of fibroblast growth factor receptor signaling pathway nephron epithelium development ureteric bud development morphogenesis of embryonic epithelium regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus tube development mesonephros development response to endogenous stimulus morphogenesis of an epithelium negative regulation of signal transduction tissue morphogenesis anatomical structure morphogenesis kidney morphogenesis anatomical structure formation involved in morphogenesis mesonephric tubule morphogenesis regulation of cell communication response to growth factor kidney development negative regulation of cell proliferation involved in kidney development negative regulation of cell population proliferation cell population proliferation negative regulation of cell proliferation involved in mesonephros development cell proliferation involved in kidney development regulation of cell proliferation involved in kidney development regulation of cell population proliferation cell proliferation involved in mesonephros development regulation of cell proliferation involved in mesonephros development negative regulation of interleukin-2 production negative regulation of macromolecule metabolic process regulation of interleukin-2 production negative regulation of metabolic process interleukin-2 production negative regulation of cytokine production negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of multicellular organismal process regulation of developmental process regulation of cell differentiation epithelial cell differentiation regulation of epithelial cell differentiation regulation of epithelial cell differentiation involved in kidney development regulation of nephron tubule epithelial cell differentiation epithelial cell differentiation involved in kidney development regulation of multicellular organismal development nephron tubule epithelial cell differentiation cell differentiation involved in kidney development canonical Wnt signaling pathway Wnt signaling pathway eye development visual system development camera-type eye development sensory system development lens development in camera-type eye interleukin-13 production positive regulation of interleukin-13 production regulation of interleukin-13 production response to interleukin-4 response to peptide response to cytokine cellular response to cytokine stimulus cellular response to interleukin-4 myeloid leukocyte differentiation myeloid cell differentiation mast cell differentiation positive regulation of DNA-templated transcription RNA metabolic process positive regulation of miRNA transcription positive regulation of miRNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process miRNA transcription regulation of miRNA metabolic process regulation of nucleobase-containing compound metabolic process miRNA metabolic process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription regulation of miRNA transcription embryonic hemopoiesis embryonic organ development cell fate commitment regulation of epithelial to mesenchymal transition mesenchyme development negative regulation of cell differentiation negative regulation of developmental process negative regulation of epithelial to mesenchymal transition epithelial to mesenchymal transition mesenchymal cell differentiation endocrine system development gland development parathyroid gland development system process transport secretion regulation of hormone levels cell-cell signaling export from cell parathyroid hormone secretion hormone secretion establishment of localization localization endocrine hormone secretion secretion by cell endocrine process signal release hormone transport regulation of biological quality regulation of type II interferon production type II interferon production negative regulation of type II interferon production negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process heart development cardiac chamber morphogenesis heart morphogenesis circulatory system development cardiac right ventricle morphogenesis cardiac ventricle morphogenesis cardiac chamber development cardiac ventricle development adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of immune effector process lymphocyte mediated immunity T cell mediated immunity positive regulation of leukocyte mediated immunity T-helper 2 cell cytokine production T cell cytokine production type 2 immune response positive regulation of immune response regulation of T-helper 2 cell cytokine production regulation of type 2 immune response leukocyte mediated immunity regulation of immune system process positive regulation of adaptive immune response positive regulation of T cell cytokine production positive regulation of immune system process regulation of T cell mediated immunity regulation of cytokine production involved in immune response positive regulation of T-helper 2 cell cytokine production immune response regulation of adaptive immune response immune effector process regulation of leukocyte mediated immunity regulation of immune response positive regulation of production of molecular mediator of immune response regulation of production of molecular mediator of immune response positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of lymphocyte mediated immunity positive regulation of response to stimulus regulation of T cell cytokine production CD4-positive, alpha-beta T cell cytokine production regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of immune effector process cytokine production involved in immune response production of molecular mediator of immune response adaptive immune response positive regulation of type 2 immune response regulation of lymphocyte mediated immunity positive regulation of T cell mediated immunity positive regulation of cytokine production involved in immune response ventricular septum development cardiac septum development otic vesicle development ear morphogenesis embryonic organ morphogenesis sensory organ morphogenesis inner ear morphogenesis leukocyte migration mononuclear cell migration lymphocyte migration cell migration cell motility regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response defense response response to external stimulus regulation of inflammatory response response to stress negative regulation of response to external stimulus regulation of response to stress negative regulation of defense response inflammatory response mammary gland development negative regulation of mammary gland epithelial cell proliferation epithelial cell proliferation regulation of mammary gland epithelial cell proliferation mammary gland epithelium development regulation of epithelial cell proliferation negative regulation of epithelial cell proliferation mammary gland epithelial cell proliferation negative regulation of locomotion regulation of cell motility regulation of locomotion negative regulation of cell motility locomotion anatomical structure maturation cell maturation developmental maturation heart valve development aortic valve development heart valve morphogenesis semi-lunar valve development aortic valve morphogenesis cell fate determination cellular response to tumor necrosis factor response to tumor necrosis factor reproductive system development reproductive process uterus development developmental process involved in reproduction reproductive structure development macrophage differentiation axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cellular component organization or biogenesis plasma membrane bounded cell projection organization axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons neuron projection guidance neuron development response to ionizing radiation response to radiation response to abiotic stimulus response to gamma radiation negative regulation of endothelial cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process endothelial cell apoptotic process apoptotic process programmed cell death regulation of endothelial cell apoptotic process regulation of kidney development positive regulation of developmental process regulation of epithelial tube formation regulation of animal organ morphogenesis regulation of mesonephros development positive regulation of epithelial tube formation positive regulation of ureteric bud formation regulation of ureteric bud formation positive regulation of morphogenesis of an epithelium regulation of morphogenesis of an epithelium regulation of anatomical structure morphogenesis positive regulation of animal organ morphogenesis regulation of leukocyte differentiation regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation cell activation involved in immune response regulation of cell development CD4-positive, alpha-beta T cell differentiation involved in immune response alpha-beta T cell differentiation involved in immune response regulation of T-helper cell differentiation alpha-beta T cell activation T-helper cell differentiation regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation CD4-positive, alpha-beta T cell differentiation regulation of T cell differentiation alpha-beta T cell differentiation T cell activation involved in immune response alpha-beta T cell activation involved in immune response CD4-positive, alpha-beta T cell activation leukocyte activation involved in immune response lymphocyte activation involved in immune response regulation of lymphocyte differentiation regulation of T cell activation T cell differentiation involved in immune response regulation of CD4-positive, alpha-beta T cell activation regulation of hemopoiesis regulation of lymphocyte activation regulation of neuron projection development regulation of cellular component organization regulation of cell projection organization regulation of plasma membrane bounded cell projection organization mesenchymal to epithelial transition regulation of establishment of cell polarity regulation of establishment or maintenance of cell polarity establishment of cell polarity establishment or maintenance of cell polarity cellular response to BMP stimulus response to BMP chromatin organization chromatin remodeling gonad development sex differentiation male gonad development male sex differentiation development of primary male sexual characteristics development of primary sexual characteristics negative regulation of cell cycle cell cycle regulation of cell cycle biological process involved in interspecies interaction between organisms response to other organism defense response to symbiont response to biotic stimulus defense response to other organism innate immune response response to external biotic stimulus norepinephrine biosynthetic process catechol-containing compound metabolic process norepinephrine metabolic process amine metabolic process biogenic amine biosynthetic process catecholamine metabolic process amine biosynthetic process phenol-containing compound metabolic process catecholamine biosynthetic process phenol-containing compound biosynthetic process catechol-containing compound biosynthetic process biogenic amine metabolic process regulation of molecular function positive regulation of molecular function regulation of DNA binding regulation of binding positive regulation of transcription regulatory region DNA binding regulation of transcription regulatory region DNA binding positive regulation of binding positive regulation of DNA binding sympathetic nervous system development autonomic nervous system development ureter development ureter maturation animal organ maturation embryo development ending in birth or egg hatching pharyngeal system development chordate embryonic development in utero embryonic development hypersensitivity type IV hypersensitivity acute inflammatory response to antigenic stimulus inflammatory response to antigenic stimulus acute inflammatory response homeostatic process erythrocyte differentiation multicellular organismal-level homeostasis homeostasis of number of cells myeloid cell homeostasis erythrocyte homeostasis TOR signaling intracellular signal transduction positive regulation of transcription by RNA polymerase II ureter morphogenesis immune system development immune response-regulating cell surface receptor signaling pathway immune response-activating signaling pathway immune response-regulating signaling pathway immune response-activating cell surface receptor signaling pathway T cell receptor signaling pathway antigen receptor-mediated signaling pathway activation of immune response hematopoietic or lymphoid organ development thymus development positive regulation of locomotion endothelial cell migration positive regulation of cell migration positive regulation of endothelial cell migration positive regulation of cell motility regulation of cell migration regulation of endothelial cell migration response to hormone response to estrogen humoral immune response intracellular signaling cassette phosphatidylinositol 3-kinase/protein kinase B signal transduction glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation glial cell-derived neurotrophic factor receptor signaling pathway regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation neuron apoptotic process regulation of neuron apoptotic process response to X-ray cellular response to ionizing radiation cellular response to radiation cellular response to environmental stimulus cellular response to X-ray regulation of cellular response to X-ray cellular response to abiotic stimulus positive regulation of cell communication regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signal transduction regulation of intracellular signal transduction positive regulation of intracellular signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signaling developmental growth growth response to interferon-alpha cellular response to interferon-alpha response to alcohol response to oxygen-containing compound response to ethanol positive regulation of hormone metabolic process regulation of hormone metabolic process modified amino acid metabolic process hormone metabolic process thyroid hormone metabolic process regulation of thyroid hormone generation thyroid hormone generation positive regulation of thyroid hormone generation thymic T cell selection T cell differentiation in thymus T cell selection T-helper 2 cell differentiation nephric duct morphogenesis nephric duct formation nephric duct development response to virus neuron migration regulation of interleukin-4 production positive regulation of interleukin-4 production interleukin-4 production post-embryonic development positive regulation of T cell differentiation positive regulation of cell activation positive regulation of leukocyte activation positive regulation of T cell activation positive regulation of cell development regulation of leukocyte cell-cell adhesion positive regulation of leukocyte cell-cell adhesion leukocyte cell-cell adhesion positive regulation of cell-cell adhesion positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of hemopoiesis positive regulation of cell differentiation regulation of cell-cell adhesion positive regulation of cell adhesion regulation of cell adhesion positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000679	Zinc finger, GATA-type	Domain
A	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
A	IPR016374	Transcription factor, GATA-2/3	Family
A	IPR039355	Transcription factor GATA	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P23771	rheumatoid arthritis hypoparathyroidism-deafness-renal disease syndrome adult T-cell leukemia/lymphoma Hodgkins lymphoma Hodgkin's granuloma breast carcinoma asthma sarcomatoid carcinoma carcinoma congenital anomaly of kidney and urinary tract nephrosclerosis ductal breast carcinoma in situ nodular sclerosis classical Hodgkin lymphoma glioblastoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia rheumatoid arthritis hypoparathyroidism-deafness-renal disease syndrome adult T-cell leukemia/lymphoma Hodgkins lymphoma Hodgkin's granuloma breast carcinoma asthma sarcomatoid carcinoma carcinoma congenital anomaly of kidney and urinary tract nephrosclerosis ductal breast carcinoma in situ nodular sclerosis classical Hodgkin lymphoma glioblastoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Hodgkin's lymphoma, mixed cellularity acute lymphoblastic leukemia Huntington disease undifferentiated carcinoma B-cell acute lymphoblastic leukemia lung cancer Burkitt lymphoma mammary neoplasms, animal cutaneous lupus erythematosus neuroblastoma osteosarcoma pituitary cancer Hodgkin's lymphoma, lymphocytic depletion primitive neuroectodermal tumor sarcoidosis acute T cell leukemia hypereosinophilic syndrome allergic disease interstitial cystitis breast adenocarcinoma breast disease malignant pancreatic neoplasm cancer colorectal cancer digestive system neuroendocrine neoplasm nodular lymphocyte predominant Hodgkin lymphoma pancreatic intraductal papillary-mucinous neoplasm Hodgkin's lymphoma, lymphocytic-histiocytic predominance psoriasis atypical teratoid rhabdoid tumor invasive ductal breast carcinoma breast cancer malignant mesothelioma breast fibroadenoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.