4H6W | pdb_00004h6w

Structure of Prenylagaramide maturation protease PagA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4h6wb_	Alpha and beta proteins (a/b)	Subtilisin-like	Subtilisin-like	automated matches	automated matches	(Planktothrix agardhii NIES-596 ) [TaxId: 443922 ],	SCOPe (2.08)
A	d4h6wa_	Alpha and beta proteins (a/b)	Subtilisin-like	Subtilisin-like	automated matches	automated matches	(Planktothrix agardhii NIES-596 ) [TaxId: 443922 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Subtilases	8069724	4000409	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Subtilisin-like	8069725	3000226	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Subtilisin-like	8069725	3000226	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e4h6wB1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: FtsJ	F:	ECOD (20:10:01)
A		e4h6wA1	A: Globin-like	X: Nucleoside diphosphate kinases	H: Nucleoside diphosphate kinases	T: Aldo_ket_red	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
A	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	N-terminal cyanobactin protease	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023830	Peptidase S8A, PatG	Family
A, B	IPR015500	Peptidase S8, subtilisin-related	Family
A, B	IPR023828	Peptidase S8, subtilisin, Ser-active site	Active Site
A, B	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
A, B	IPR040636	PatG, C-terminal	Domain
A, B	IPR040483	PatG domain	Domain
A, B	IPR050131	Subtilisin-like serine protease	Family
A, B	IPR000209	Peptidase S8/S53 domain	Domain
A, B	IPR034056	PatG/PatA-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.