4H5M | pdb_00004h5m

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d4h5mf_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
E	d4h5me_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
D	d4h5md_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
C	d4h5mc_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
B	d4h5mb_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
A	d4h5ma_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	RRM_1	e4h5mF1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
E	RRM_1	e4h5mE1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
D	TGT	e4h5mD1	A: a/b three-layered sandwiches	X: Globin-like	H: Nucleoside diphosphate kinases	T: Nucleoside diphosphate kinases	F: TGT	ECOD (v294.1)
C	RRM_1	e4h5mC1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
B	RRM_1	e4h5mB1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
A	RRM_1	e4h5mA1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Nucleocapsid protein	RNA binding binding nucleic acid binding identical protein binding protein binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR015971	Nucleocapsid, Phlebovirus	Family
A, B, C, D, E A, B, C, D, E, F	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.