4H0M | pdb_00004h0m

X-Ray Crystal Structure of Phycocyanin from Synechococcus elongatus sp. PCC 7942

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
W	d4h0mw_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
U	d4h0mu_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
S	d4h0ms_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
Q	d4h0mq_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
O	d4h0mo_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
M	d4h0mm_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
K	d4h0mk_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
I	d4h0mi_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
G	d4h0mg_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
E	d4h0me_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
C	d4h0mc_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
A	d4h0ma_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
X	d4h0mx_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
V	d4h0mv_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
T	d4h0mt_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
R	d4h0mr_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
P	d4h0mp_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
N	d4h0mn_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
L	d4h0ml_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
J	d4h0mj_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
H	d4h0mh_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
F	d4h0mf_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
D	d4h0md_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)
B	d4h0mb_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Synechococcus elongatus PCC 7942 = FACHB-805 ) [TaxId: 1140 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
W	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8064898	3000554	SCOP2B (2022-06-29)
A	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8064897	4000579	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Globin-like	8064898	3000554	SCOP2 (2022-06-29)
X	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8064836	3000554	SCOP2B (2022-06-29)
B	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8064835	4000579	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Globin-like	8064836	3000554	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
W	V-set	e4h0mW1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
U	V-set	e4h0mU1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
S	V-set	e4h0mS1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
Q	V-set	e4h0mQ1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
O	V-set	e4h0mO1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
M	V-set	e4h0mM1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
K	V-set	e4h0mK1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
I	V-set	e4h0mI1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
G	V-set	e4h0mG1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
E	V-set	e4h0mE1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
C	V-set	e4h0mC1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
A	Sushi	e4h0mA1	A: a/b three-layered sandwiches	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Sushi	ECOD (v294.1)
X	V-set	e4h0mX1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
V	V-set	e4h0mV1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
T	V-set	e4h0mT1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
R	V-set	e4h0mR1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
P	V-set	e4h0mP1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
N	V-set	e4h0mN1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
L	V-set	e4h0mL1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
J	V-set	e4h0mJ1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
H	V-set	e4h0mH1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
F	V-set	e4h0mF1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
D	V-set	e4h0mD1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
B	Sushi	e4h0mB1	A: a/b three-layered sandwiches	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Sushi	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
W	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
U	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
S	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
Q	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
O	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
M	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
K	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
I	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
G	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
E	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
C	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
A	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
X	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
V	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
T	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
R	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
P	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
N	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
L	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
J	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
H	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
F	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
D	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
B	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	C-phycocyanin alpha chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	C-phycocyanin beta chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR006246	Phycocyanin, alpha subunit	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR012128	Phycobilisome, alpha/beta subunit	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR006247	Phycocyanin, beta subunit	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079