4GZA | pdb_00004gza

Complex of mouse Plexin A2 - Semaphorin 3A - Neuropilin-1

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2 Familyspermadhesin, cub domain 8079764 4002562 SCOP2 (2022-06-29)
HSCOP2 SuperfamilySpermadhesin, CUB domain 8079765 3001412 SCOP2 (2022-06-29)
GSCOP2B SuperfamilySema domain-like 8038490 3000180 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HFRB_dome4gzaH1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Ribonuclease H-likeT: Ribonuclease H-likeF: FRB_domECOD (v294.1)
GNeure4gzaG1 A: a/b three-layered sandwichesX: Globin-likeH: Nucleoside diphosphate kinasesT: Nucleoside diphosphate kinasesF: NeurECOD (v294.1)
FV_ATPase_Ie4gzaF1 A: a/b three-layered sandwichesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: V_ATPase_IECOD (v294.1)
EV_ATPase_Ie4gzaE1 A: a/b three-layered sandwichesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: V_ATPase_IECOD (v294.1)
DV_ATPase_Ie4gzaD1 A: a/b three-layered sandwichesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: V_ATPase_IECOD (v294.1)
CV_ATPase_Ie4gzaC1 A: a/b three-layered sandwichesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: V_ATPase_IECOD (v294.1)
BV_ATPase_Ie4gzaB2 A: a/b three-layered sandwichesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: V_ATPase_IECOD (v294.1)
AV_ATPase_Ie4gzaA1 A: a/b three-layered sandwichesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: V_ATPase_IECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00431CUB domain (CUB)CUB domainDomain
PF01403Sema domain (Sema)Sema domain- Repeat
A, B, C, D, E
PF24479Plexin A/B, PSI domain (PSI_PlexinA-B)Plexin A/B, PSI domainThis entry represents a PSI domain found in Plexin A, B and related proteins. These are neuronal receptors for the axon guidance regulators Semaphorins. Semaphorin-plexin interactions play central roles in regulating processes such as neuronal axon g ...This entry represents a PSI domain found in Plexin A, B and related proteins. These are neuronal receptors for the axon guidance regulators Semaphorins. Semaphorin-plexin interactions play central roles in regulating processes such as neuronal axon guidance, angiogenesis and immune responses [1,2].
Domain
A, B, C, D, E
PF01437Plexin repeat (PSI)Plexin repeat- Family
A, B, C, D, E
PF01403Sema domain (Sema)Sema domain- Repeat
A, B, C, D, E
PF17960TIG domain (TIG_plexin)TIG domainThis entry represents an TIG or IPT domain (Ig domain shared by Plexins and Transcription factors) found in plexins [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Neuropilin-1
Semaphorin-3A
A, B, C, D, E
Plexin-A2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
IPR000859CUB domainDomain
IPR022579Neuropilin, C-terminalDomain
IPR000421Coagulation factor 5/8, C-terminal domainDomain
IPR035914Spermadhesin, CUB domain superfamilyHomologous Superfamily
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
IPR014648NeuropilinFamily
IPR050633Neuropilin/Multicopper Oxidase/Coagulation FactorFamily
IPR000998MAM domainDomain
IPR042820Semaphorin-3A, sema domainDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR003599Immunoglobulin domain subtypeDomain
IPR041416IL-1Ra-like, immunoglobulin domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR036352Sema domain superfamilyHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR016201PSI domainDomain
IPR027231SemaphorinFamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR001627Sema domainDomain
A, B, C, D, E
IPR002909IPT domainDomain
A, B, C, D, E
IPR042826Plexin-A2, sema domainDomain
A, B, C, D, E
IPR041362Plexin, TIG domain 2Domain
A, B, C, D, E
IPR016201PSI domainDomain
A, B, C, D, E
IPR014756Immunoglobulin E-setHomologous Superfamily
A, B, C, D, E
IPR008936Rho GTPase activation proteinHomologous Superfamily
A, B, C, D, E
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR002165Plexin repeatRepeat
A, B, C, D, E
IPR041019Plexin, TIG domain 1Domain
A, B, C, D, E
IPR031148Plexin familyFamily
A, B, C, D, E
IPR046800Plexin, cytoplasmic RhoGTPase-binding domainDomain
A, B, C, D, E
IPR013783Immunoglobulin-like foldHomologous Superfamily
A, B, C, D, E
IPR013548Plexin, cytoplasmic RasGAP domainDomain
A, B, C, D, E
IPR036352Sema domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR001627Sema domainDomain