4GU3
Crystal structure of the T1L reovirus attachment protein sigma1 in complex with the GM2 glycan
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01664 | e4gu3A6 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: PF01664 | ECOD (1.6) |
A | PF01664 | e4gu3A5 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: PF01664 | ECOD (1.6) |
B | PF01664 | e4gu3B4 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: PF01664 | ECOD (1.6) |
B | PF01664 | e4gu3B3 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: PF01664 | ECOD (1.6) |
C | PF01664 | e4gu3C4 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: PF01664 | ECOD (1.6) |
C | PF01664 | e4gu3C3 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: PF01664 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.25.20 | Mainly Beta | Ribbon | Laminin | reovirus attachment protein sigma1 | CATH (4.3.0) |
A | 2.60.90.20 | Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Virus attachment protein , globular domain | CATH (4.3.0) |
B | 2.10.25.20 | Mainly Beta | Ribbon | Laminin | reovirus attachment protein sigma1 | CATH (4.3.0) |
B | 2.60.90.20 | Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Virus attachment protein , globular domain | CATH (4.3.0) |
C | 2.10.25.20 | Mainly Beta | Ribbon | Laminin | reovirus attachment protein sigma1 | CATH (4.3.0) |
C | 2.60.90.20 | Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Virus attachment protein , globular domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01664 | Reovirus viral attachment protein sigma 1 (Reo_sigma1) | Reovirus viral attachment protein sigma 1 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Outer capsid protein sigma-1 | - |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008982 | Adenovirus pIV-like, attachment domain | Homologous Superfamily | |
IPR002592 | Viral attachment sigma 1, reoviral | Family |