4GO1
Crystal Structure of full length transcription repressor LsrR from E. coli.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sigma70_r4_1 | e4go1A2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Sigma70_r4_1 | ECOD (1.6) |
A | Sugar-bind | e4go1A3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: Sugar-bind | ECOD (1.6) |
B | Sigma70_r4_1 | e4go1B2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Sigma70_r4_1 | ECOD (1.6) |
B | Sugar-bind | e4go1B1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: Sugar-bind | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
A | 3.40.50.1360 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 3.40.50.1360 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04198 | Putative sugar-binding domain (Sugar-bind) | Putative sugar-binding domain | This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix Pfam:PF00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR051054 | Bacterial SorC Transcriptional Regulators | Family | |
IPR007324 | Sugar-binding domain, putative | Domain | |
IPR037171 | NagB/RpiA transferase-like | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |