4GKF | pdb_00004gkf

Crystal structure and characterization of Cmr5 protein from Pyrococcus furiosus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4gkfa_	All alpha proteins	ATPD N-terminal domain-like	AF1862-like	automated matches	automated matches	(Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ],	SCOPe (2.08)
B	d4gkfb_	All alpha proteins	ATPD N-terminal domain-like	AF1862-like	automated matches	automated matches	(Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	AF1862-like	8063708	3001582	SCOP2B (2022-06-29)
B	SCOP2 Family	Cas Cmr5-like	8063707	4001438	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	AF1862-like	8063708	3001582	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cas_Cmr5	e4gkfA2	A: alpha bundles	X: ATPD N-terminal domain-like	H: Cas Cmr5-like (From Topology)	T: Cas Cmr5-like	F: Cas_Cmr5	ECOD (1.6)
B	Cas_Cmr5	e4gkfB1	A: alpha bundles	X: ATPD N-terminal domain-like	H: Cas Cmr5-like (From Topology)	T: Cas Cmr5-like	F: Cas_Cmr5	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.520.30	Mainly Alpha	Orthogonal Bundle	Peroxidase	domain 1	CATH (4.3.0)
B	1.10.520.30	Mainly Alpha	Orthogonal Bundle	Peroxidase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09701	CRISPR-associated protein (Cas_Cmr5) (Cas_Cmr5)	CRISPR-associated protein (Cas_Cmr5)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	CRISPR system Cmr subunit Cmr5	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR010160	CRISPR-associated protein, Cmr5	Family
A, B	IPR023101	AF1862-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.