4G7E | pdb_00004g7e

Crystal structure of pigeon pea urease


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APLN02303_like,Urease_betae4g7eA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Urease, beta-subunit (From Topology)T: Urease, beta-subunitF: PLN02303_like,Urease_betaECOD (1.6)
AUrease_alphae4g7eA4 A: beta sandwichesX: Composite domain of metallo-dependent hydrolases (From Topology)H: Composite domain of metallo-dependent hydrolases (From Topology)T: Composite domain of metallo-dependent hydrolasesF: Urease_alphaECOD (1.6)
AUrease_gammae4g7eA5 A: a+b two layersX: Urease, gamma-subunit (From Topology)H: Urease, gamma-subunit (From Topology)T: Urease, gamma-subunitF: Urease_gammaECOD (1.6)
AAmidohydro_1_Ne4g7eA6 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Amidohydro_1_NECOD (1.6)
BPLN02303_like,Urease_betae4g7eB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Urease, beta-subunit (From Topology)T: Urease, beta-subunitF: PLN02303_like,Urease_betaECOD (1.6)
BUrease_alphae4g7eB4 A: beta sandwichesX: Composite domain of metallo-dependent hydrolases (From Topology)H: Composite domain of metallo-dependent hydrolases (From Topology)T: Composite domain of metallo-dependent hydrolasesF: Urease_alphaECOD (1.6)
BUrease_gammae4g7eB5 A: a+b two layersX: Urease, gamma-subunit (From Topology)H: Urease, gamma-subunit (From Topology)T: Urease, gamma-subunitF: Urease_gammaECOD (1.6)
BAmidohydro_1_Ne4g7eB6 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Amidohydro_1_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.280.10 Alpha Beta 2-Layer Sandwich Urease subunit ACATH (4.3.0)
A2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
A2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunitCATH (4.3.0)
A3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
B3.30.280.10 Alpha Beta 2-Layer Sandwich Urease subunit ACATH (4.3.0)
B2.30.40.10 Mainly Beta Roll Urease, subunit C domain 1CATH (4.3.0)
B2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunitCATH (4.3.0)
B3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029754Urease nickel binding siteBinding Site
IPR017950Urease active siteActive Site
IPR040881Urease subunit beta-alpha, linker domainDomain
IPR008221UreaseFamily
IPR006680Amidohydrolase-relatedDomain
IPR011059Metal-dependent hydrolase, composite domain superfamilyHomologous Superfamily
IPR032466Metal-dependent hydrolaseHomologous Superfamily
IPR036463Urease, gamma subunit superfamilyHomologous Superfamily
IPR011612Urease alpha-subunit, N-terminal domainDomain
IPR002019Urease, beta subunit-likeFamily
IPR036461Urease, beta subunit superfamilyHomologous Superfamily
IPR050112Urease Alpha SubunitFamily
IPR005848Urease, alpha subunitFamily
IPR002026Urease, gamma/gamma-beta subunitFamily
IPR017951Urease alpha subunit, C-terminalDomain
IPR029754Urease nickel binding siteBinding Site
IPR017950Urease active siteActive Site
IPR040881Urease subunit beta-alpha, linker domainDomain
IPR008221UreaseFamily
IPR006680Amidohydrolase-relatedDomain
IPR011059Metal-dependent hydrolase, composite domain superfamilyHomologous Superfamily
IPR032466Metal-dependent hydrolaseHomologous Superfamily
IPR036463Urease, gamma subunit superfamilyHomologous Superfamily
IPR011612Urease alpha-subunit, N-terminal domainDomain
IPR002019Urease, beta subunit-likeFamily
IPR036461Urease, beta subunit superfamilyHomologous Superfamily
IPR050112Urease Alpha SubunitFamily
IPR005848Urease, alpha subunitFamily
IPR002026Urease, gamma/gamma-beta subunitFamily
IPR017951Urease alpha subunit, C-terminalDomain