4FMG | pdb_00004fmg

Merkel Cell Polyomavirus VP1 Unassembled Pentamer

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4fmga_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
B	d4fmgb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
C	d4fmgc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
D	d4fmgd_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
E	d4fmge_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
F	d4fmgf_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
G	d4fmgg_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
H	d4fmgh_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
I	d4fmgi_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
J	d4fmgj_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
K	d4fmgk_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
M	d4fmgm_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
P	d4fmgp_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
Q	d4fmgq_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
R	d4fmgr_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
S	d4fmgs_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
T	d4fmgt_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
O	d4fmgo_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
N	d4fmgn_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)
L	d4fmgl_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group I dsDNA viruses	Papovaviridae-like VP	automated matches	(Merkel cell polyomavirus ) [TaxId: 493803 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Group I dsDNA viruses	8081601	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cytochrom_C	e4fmgA1	A: alpha arrays	X: Flavodoxin-like	H: Precorrin-8X methylmutase CbiC/CobH	T: Precorrin-8X methylmutase CbiC/CobH	F: Cytochrom_C	ECOD (v295)
B	Ribosomal_L31	e4fmgB1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
C	Ribosomal_L31	e4fmgC1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
D	Ribosomal_L31	e4fmgD1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
E	Ribosomal_L31	e4fmgE1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
F	Ribosomal_L31	e4fmgF1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
G	Ribosomal_L31	e4fmgG1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
H	Ribosomal_L31	e4fmgH1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
I	Ribosomal_L31	e4fmgI1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
J	Ribosomal_L31	e4fmgJ1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
K	Ribosomal_L31	e4fmgK1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
M	Ribosomal_L31	e4fmgM1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
P	Ribosomal_L31	e4fmgP1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
Q	Ribosomal_L31	e4fmgQ1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
R	Ribosomal_L31	e4fmgR1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
S	Ribosomal_L31	e4fmgS1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
T	Ribosomal_L31	e4fmgT1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
O	Ribosomal_L31	e4fmgO1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
N	Ribosomal_L31	e4fmgN1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)
L	Ribosomal_L31	e4fmgL1	A: alpha arrays	X: beta-Grasp	H: HTH	T: winged helix domain	F: Ribosomal_L31	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
B	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
C	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
D	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
E	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
F	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
G	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
H	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
I	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
J	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
K	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
M	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
P	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
Q	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
R	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
S	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
T	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
O	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
N	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)
L	2.60.175.10	Mainly Beta	Sandwich	Polyomavirus Vp1	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	VP1	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR000662	Capsid protein VP1,Polyomavirus	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.