4FM4 | pdb_00004fm4

Wild Type Fe-type Nitrile Hydratase from Comamonas testosteroni Ni1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d4fm4p_	All beta proteins	SH3-like barrel	Electron transport accessory proteins	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
N	d4fm4n_	All beta proteins	SH3-like barrel	Electron transport accessory proteins	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
L	d4fm4l_	All beta proteins	SH3-like barrel	Electron transport accessory proteins	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
J	d4fm4j_	All beta proteins	SH3-like barrel	Electron transport accessory proteins	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
H	d4fm4h_	All beta proteins	SH3-like barrel	Electron transport accessory proteins	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
F	d4fm4f_	All beta proteins	SH3-like barrel	Electron transport accessory proteins	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
D	d4fm4d_	All beta proteins	SH3-like barrel	Electron transport accessory proteins	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
B	d4fm4b_	All beta proteins	SH3-like barrel	Electron transport accessory proteins	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
O	d4fm4o_	Alpha and beta proteins (a+b)	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
M	d4fm4m_	Alpha and beta proteins (a+b)	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
K	d4fm4k_	Alpha and beta proteins (a+b)	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
I	d4fm4i_	Alpha and beta proteins (a+b)	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
G	d4fm4g_	Alpha and beta proteins (a+b)	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
E	d4fm4e_	Alpha and beta proteins (a+b)	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
C	d4fm4c_	Alpha and beta proteins (a+b)	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
A	d4fm4a_	Alpha and beta proteins (a+b)	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	automated matches	automated matches	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Electron transport accessory proteins	8077355	3000325	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Electron transport accessory proteins	8077355	3000325	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Electron transport accessory proteins	8077355	3000325	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Electron transport accessory proteins	8077355	3000325	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Electron transport accessory proteins	8077355	3000325	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Electron transport accessory proteins	8077355	3000325	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Electron transport accessory proteins	8077355	3000325	SCOP2B (2022-06-29)
B	SCOP2 Family	Nitrile hydratase beta chain	8077354	4001743	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Electron transport accessory proteins	8077355	3000325	SCOP2 (2022-06-29)
O	SCOP2B Superfamily	Nitrile hydratase alpha chain	8077351	3000945	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Nitrile hydratase alpha chain	8077351	3000945	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Nitrile hydratase alpha chain	8077351	3000945	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Nitrile hydratase alpha chain	8077351	3000945	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nitrile hydratase alpha chain	8077351	3000945	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nitrile hydratase alpha chain	8077351	3000945	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nitrile hydratase alpha chain	8077351	3000945	SCOP2B (2022-06-29)
A	SCOP2 Family	Nitrile hydratase alpha chain	8077350	4002201	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nitrile hydratase alpha chain	8077351	3000945	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	NHase_beta_C	e4fm4P3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: NHase_beta_C	ECOD (1.6)
P	NHase_beta_N	e4fm4P2	A: alpha arrays	X: Nitrile hydratase subunit beta N-termial domain (From Topology)	H: Nitrile hydratase subunit beta N-termial domain (From Topology)	T: Nitrile hydratase subunit beta N-termial domain	F: NHase_beta_N	ECOD (1.6)
N	NHase_beta_C	e4fm4N3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: NHase_beta_C	ECOD (1.6)
N	NHase_beta_N	e4fm4N2	A: alpha arrays	X: Nitrile hydratase subunit beta N-termial domain (From Topology)	H: Nitrile hydratase subunit beta N-termial domain (From Topology)	T: Nitrile hydratase subunit beta N-termial domain	F: NHase_beta_N	ECOD (1.6)
L	NHase_beta_C	e4fm4L3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: NHase_beta_C	ECOD (1.6)
L	NHase_beta_N	e4fm4L2	A: alpha arrays	X: Nitrile hydratase subunit beta N-termial domain (From Topology)	H: Nitrile hydratase subunit beta N-termial domain (From Topology)	T: Nitrile hydratase subunit beta N-termial domain	F: NHase_beta_N	ECOD (1.6)
J	NHase_beta_C	e4fm4J3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: NHase_beta_C	ECOD (1.6)
J	NHase_beta_N	e4fm4J2	A: alpha arrays	X: Nitrile hydratase subunit beta N-termial domain (From Topology)	H: Nitrile hydratase subunit beta N-termial domain (From Topology)	T: Nitrile hydratase subunit beta N-termial domain	F: NHase_beta_N	ECOD (1.6)
H	NHase_beta_C	e4fm4H3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: NHase_beta_C	ECOD (1.6)
H	NHase_beta_N	e4fm4H2	A: alpha arrays	X: Nitrile hydratase subunit beta N-termial domain (From Topology)	H: Nitrile hydratase subunit beta N-termial domain (From Topology)	T: Nitrile hydratase subunit beta N-termial domain	F: NHase_beta_N	ECOD (1.6)
F	NHase_beta_C	e4fm4F3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: NHase_beta_C	ECOD (1.6)
F	NHase_beta_N	e4fm4F2	A: alpha arrays	X: Nitrile hydratase subunit beta N-termial domain (From Topology)	H: Nitrile hydratase subunit beta N-termial domain (From Topology)	T: Nitrile hydratase subunit beta N-termial domain	F: NHase_beta_N	ECOD (1.6)
D	NHase_beta_C	e4fm4D3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: NHase_beta_C	ECOD (1.6)
D	NHase_beta_N	e4fm4D2	A: alpha arrays	X: Nitrile hydratase subunit beta N-termial domain (From Topology)	H: Nitrile hydratase subunit beta N-termial domain (From Topology)	T: Nitrile hydratase subunit beta N-termial domain	F: NHase_beta_N	ECOD (1.6)
B	NHase_beta_C	e4fm4B3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: NHase_beta_C	ECOD (1.6)
B	NHase_beta_N	e4fm4B2	A: alpha arrays	X: Nitrile hydratase subunit beta N-termial domain (From Topology)	H: Nitrile hydratase subunit beta N-termial domain (From Topology)	T: Nitrile hydratase subunit beta N-termial domain	F: NHase_beta_N	ECOD (1.6)
O	NHase_alpha	e4fm4O1	A: a+b complex topology	X: Nitrile hydratase alpha chain (From Topology)	H: Nitrile hydratase alpha chain (From Topology)	T: Nitrile hydratase alpha chain	F: NHase_alpha	ECOD (1.6)
M	NHase_alpha	e4fm4M1	A: a+b complex topology	X: Nitrile hydratase alpha chain (From Topology)	H: Nitrile hydratase alpha chain (From Topology)	T: Nitrile hydratase alpha chain	F: NHase_alpha	ECOD (1.6)
K	NHase_alpha	e4fm4K1	A: a+b complex topology	X: Nitrile hydratase alpha chain (From Topology)	H: Nitrile hydratase alpha chain (From Topology)	T: Nitrile hydratase alpha chain	F: NHase_alpha	ECOD (1.6)
I	NHase_alpha	e4fm4I1	A: a+b complex topology	X: Nitrile hydratase alpha chain (From Topology)	H: Nitrile hydratase alpha chain (From Topology)	T: Nitrile hydratase alpha chain	F: NHase_alpha	ECOD (1.6)
G	NHase_alpha	e4fm4G1	A: a+b complex topology	X: Nitrile hydratase alpha chain (From Topology)	H: Nitrile hydratase alpha chain (From Topology)	T: Nitrile hydratase alpha chain	F: NHase_alpha	ECOD (1.6)
E	NHase_alpha	e4fm4E1	A: a+b complex topology	X: Nitrile hydratase alpha chain (From Topology)	H: Nitrile hydratase alpha chain (From Topology)	T: Nitrile hydratase alpha chain	F: NHase_alpha	ECOD (1.6)
C	NHase_alpha	e4fm4C1	A: a+b complex topology	X: Nitrile hydratase alpha chain (From Topology)	H: Nitrile hydratase alpha chain (From Topology)	T: Nitrile hydratase alpha chain	F: NHase_alpha	ECOD (1.6)
A	NHase_alpha	e4fm4A1	A: a+b complex topology	X: Nitrile hydratase alpha chain (From Topology)	H: Nitrile hydratase alpha chain (From Topology)	T: Nitrile hydratase alpha chain	F: NHase_alpha	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	1.10.472.20	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
P	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
N	1.10.472.20	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
N	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
L	1.10.472.20	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
L	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
J	1.10.472.20	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
J	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
H	1.10.472.20	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
H	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
F	1.10.472.20	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
F	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
D	1.10.472.20	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
D	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
B	1.10.472.20	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
B	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
O	3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase	Chain A	CATH (4.3.0)
M	3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase	Chain A	CATH (4.3.0)
K	3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase	Chain A	CATH (4.3.0)
I	3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase	Chain A	CATH (4.3.0)
G	3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase	Chain A	CATH (4.3.0)
E	3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase	Chain A	CATH (4.3.0)
C	3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase	Chain A	CATH (4.3.0)
A	3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L, N, P	PF02211	Nitrile hydratase beta subunit, C-terminal (NHase_beta_C)	Nitrile hydratase beta subunit, C-terminal	Nitrile hydratases (NHase) EC:4.2.1.84 are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as ...	Nitrile hydratases (NHase) EC:4.2.1.84 are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit [1]. Beta subunit consists of an N-terminal helical domain and a C-terminal SH3-like domain (represented in this entry) [2,3]. Thiocyanate hydrolase (SCNase) is a member of the NHase family, comprises alpha, beta and gamma subunits which share amino acid sequence similarities with NHase beta subunit C-terminal, beta subunit N-terminal and NHase alpha subunit, respectively [3].	Domain
B, D, F, H, J B, D, F, H, J, L, N, P	PF21006	Nitrile hydratase beta subunit, N-terminal (NHase_beta_N)	Nitrile hydratase beta subunit, N-terminal	Nitrile hydratases (NHases) EC:4.2.1.84 are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as ...	Nitrile hydratases (NHases) EC:4.2.1.84 are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit [1]. Beta subunit consists of an N-terminal helical domain, represented in this entry, and a C-terminal SH3-like domain (Pfam:PF02211) [2,3]. Thiocyanate hydrolase (SCNase) is a member of the NHase family and comprises alpha, beta and gamma subunits, which share amino acid sequence similarities with NHase beta subunit C-terminal, beta subunit N-terminal and NHase alpha subunit, respectively [3].	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	PF02979	Nitrile hydratase, alpha chain (NHase_alpha)	Nitrile hydratase, alpha chain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P	Nitrile hydratase beta subunit	hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity nitrile hydratase activity cation binding transition metal ion binding ion binding binding metal ion binding small molecule binding	-	-
A, C, E, G, I A, C, E, G, I, K, M, O	Nitrile hydratase alpha subunit	hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity nitrile hydratase activity cation binding transition metal ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P	IPR003168	Nitrile hydratase, beta subunit	Family
B, D, F, H, J B, D, F, H, J, L, N, P	IPR049054	Nitrile hydratase beta subunit-like, N-terminal domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P	IPR008990	Electron transport accessory-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P	IPR042262	Nitrile hydratase beta subunit, N-terminal	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P	IPR024690	Nitrile hydratase beta subunit domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	IPR004232	Nitrile hydratase alpha/Thiocyanate hydrolase gamma	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	IPR036648	Nitrile hydratase alpha /Thiocyanate hydrolase gamma superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR023900	Nitrile hydratase alpha subunit /Thiocyanate hydrolase gamma subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, C, E, G, I A, C, E, G, I, K, M, O	CSD	Parent Component: CYS RESID: AA0262 PSI-MOD : L-cysteine sulfinic acid MOD:00267