4EM8 | pdb_00004em8

The Structure of Ribose 5-phosphate Isomerase B from Anaplasma phagocytophilum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4em8b1	Alpha and beta proteins (a/b)	Ribose/Galactose isomerase RpiB/AlsB	Ribose/Galactose isomerase RpiB/AlsB	automated matches	automated matches	(Anaplasma phagocytophilum str. HZ ) [TaxId: 212042 ],	SCOPe (2.08)
B	d4em8b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Anaplasma phagocytophilum str. HZ ) [TaxId: 212042 ],	SCOPe (2.08)
A	d4em8a1	Alpha and beta proteins (a/b)	Ribose/Galactose isomerase RpiB/AlsB	Ribose/Galactose isomerase RpiB/AlsB	automated matches	automated matches	(Anaplasma phagocytophilum str. HZ ) [TaxId: 212042 ],	SCOPe (2.08)
A	d4em8a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Anaplasma phagocytophilum str. HZ ) [TaxId: 212042 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Ribose/Galactose isomerase RpiB/AlsB	8080548	3000383	SCOP2B (2022-06-29)
A	SCOP2 Family	Ribose/Galactose isomerase RpiB/AlsB	8080547	4000476	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ribose/Galactose isomerase RpiB/AlsB	8080548	3000383	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Rrf2	e4em8B1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: Rrf2	ECOD (v294.1)
A	ADH_zinc_N	e4em8A1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: ADH_zinc_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.1400.10	Alpha Beta	3-Layer(aba) Sandwich	Ribose 5-phosphate Isomerase B	Chain: A,	CATH (4.3.0)
A	3.40.1400.10	Alpha Beta	3-Layer(aba) Sandwich	Ribose 5-phosphate Isomerase B	Chain: A,	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Ribose 5-phosphate isomerase B	isomerase activity intramolecular oxidoreductase activity, interconverting aldoses and ketoses intramolecular oxidoreductase activity ribose-5-phosphate isomerase activity catalytic activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036569	Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily	Homologous Superfamily
A, B	IPR003500	Sugar-phosphate isomerase, RpiB/LacA/LacB family	Family
A, B	IPR004785	Ribose 5-phosphate isomerase B	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.