4EFR | pdb_00004efr

Bombyx mori lipoprotein 7 (crystal form II) at 2.50 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	30K Lipoprotein C-terminal domain-like	8055951	3002324	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	30K Lipoprotein N-terminal domain-like	8055952	3002325	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	30K Lipoprotein C-terminal domain-like	8055951	3002324	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	30K Lipoprotein N-terminal domain-like	8055952	3002325	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	30K Lipoprotein N-terminal domain-like	8055952	3002325	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	30K Lipoprotein C-terminal domain-like	8055951	3002324	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	30K Lipoprotein N-terminal domain-like	8055952	3002325	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	30K Lipoprotein C-terminal domain-like	8055951	3002324	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peripla_BP_3	e4efrA1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_3	ECOD (v294.1)
B	Peripla_BP_3	e4efrB1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_3	ECOD (v294.1)
C	Peripla_BP_3	e4efrC1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_3	ECOD (v294.1)
D	Peripla_BP_3	e4efrD1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
A	1.10.10.2400	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	CATH (utative)
B	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
B	1.10.10.2400	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	CATH (utative)
C	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
C	1.10.10.2400	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	CATH (utative)
D	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
D	1.10.10.2400	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03260	Lepidopteran low molecular weight (30 kD) lipoprotein (Lipoprotein_11)	Lepidopteran low molecular weight (30 kD) lipoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	30kDa protein	-	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR004943	Lepidopteran low molecular weight lipoprotein	Family
A, B, C, D	IPR042046	Lepidopteran low molecular weight lipoprotein, N-terminal domain	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D	0AF	Parent Component: TRP RESID: AA0520 PSI-MOD : 7'-hydroxy-L-tryptophan MOD:01664

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.