4EDL | pdb_00004edl

Crystal structure of beta-parvin CH2 domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_M27	e4edlA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: SH3	T: SH3	F: Peptidase_M27	ECOD (v294.1)
B	DcpS_C	e4edlB2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: DcpS_C	ECOD (v294.1)
D	DcpS_C	e4edlD2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: DcpS_C	ECOD (v294.1)
E	DcpS_C	e4edlE2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: DcpS_C	ECOD (v294.1)
F	DcpS_C	e4edlF2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: DcpS_C	ECOD (v294.1)
C	DcpS_C	e4edlC2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: DcpS_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)
B	1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)
D	1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)
E	1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)
F	1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)
C	1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00307	Calponin homology (CH) domain (CH)	Calponin homology (CH) domain	The CH domain is found in both cytoskeletal proteins and signal transduction proteins [1]. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its ac ...	The CH domain is found in both cytoskeletal proteins and signal transduction proteins [1]. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity [4]. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin and Swiss:P15498 have only a single copy.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Beta-parvin	cytoskeletal protein binding actin binding protein binding binding	cellular component biogenesis cellular component organization cellular component assembly cell projection organization cellular process cellular component organization or biogenesis cell projection assembly lamellipodium assembly plasma membrane bounded cell projection organization plasma membrane bounded cell projection assembly lamellipodium organization cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion cellular component biogenesis cellular component organization cellular component assembly cell projection organization cellular process cellular component organization or biogenesis cell projection assembly lamellipodium assembly plasma membrane bounded cell projection organization plasma membrane bounded cell projection assembly lamellipodium organization cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion organelle organization actin cytoskeleton organization actin filament-based process cytoskeleton organization developmental process regulation of biological process regulation of developmental process establishment or maintenance of cell polarity regulating cell shape biological regulation regulation of cell shape establishment or maintenance of cell polarity cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure intracellular membraneless organelle Z disc sarcomere intracellular organelle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure intracellular membraneless organelle Z disc sarcomere intracellular organelle I band organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex cytoskeleton actin cytoskeleton cytosol cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR028433	Parvin	Family
A, B, C, D, E A, B, C, D, E, F	IPR036872	CH domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001715	Calponin homology domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q9HBI1	acne dermatomyositis interstitial cystitis oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma spina bifida alcoholic liver cirrhosis glioblastoma malignant glioma osteosarcoma psoriasis ulcerative colitis Alzheimer disease hepatocellular carcinoma non-alcoholic fatty liver disease acne dermatomyositis interstitial cystitis oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma spina bifida alcoholic liver cirrhosis glioblastoma malignant glioma osteosarcoma psoriasis ulcerative colitis Alzheimer disease hepatocellular carcinoma non-alcoholic fatty liver disease ovarian cancer rheumatoid arthritis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.