4E61 | pdb_00004e61

Crystal structure of the EB1-like motif of Bim1p

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	EB1 dimerisation domain-like	8054352	3001381	SCOP2B (2022-06-29)
A	SCOP2 Family	RP/EB dimerisation domain-like	8018829	4001361	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	EB1 dimerisation domain-like	8054352	3001381	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	EB1	e4e61B2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: EB1	ECOD (v294.1)
A		e4e61A2	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03271	EB1-like C-terminal motif (EB1)	EB1-like C-terminal motif	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Protein BIM1	cytoskeletal protein binding microtubule plus-end binding microtubule binding protein binding binding tubulin binding	2-micrometer plasmid partitioning plasmid partitioning cellular process plasmid maintenance establishment of organelle localization cellular localization organelle transport along microtubule transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell 2-micrometer plasmid partitioning plasmid partitioning cellular process plasmid maintenance establishment of organelle localization cellular localization organelle transport along microtubule transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration along microtubule microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process nuclear migration cell division cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition response to stimulus signaling negative regulation of exit from mitosis negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle cell cycle phase transition exit from mitosis intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication cellular component organization regulation of mitotic cell cycle negative regulation of cellular process negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling signal transduction cell cycle cellular component organization or biogenesis regulation of cell cycle cell cycle process regulation of biological process mitotic nuclear division negative regulation of mitotic cell cycle phase transition regulation of cell cycle process organelle fission biological regulation negative regulation of cell cycle process mitotic spindle orientation checkpoint signaling cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling nuclear division organelle organization mitotic cell cycle process regulation of exit from mitosis mitotic cell cycle phase transition protein localization to microtubule cytoskeleton protein localization to microtubule protein localization to microtubule end protein localization to microtubule plus-end protein localization to cytoskeleton protein localization to organelle macromolecule localization intracellular protein localization cellular component disassembly protein-containing complex organization microtubule cytoskeleton organization protein-containing complex disassembly microtubule polymerization or depolymerization microtubule depolymerization supramolecular fiber organization protein depolymerization cytoskeleton organization organelle assembly membraneless organelle assembly spindle assembly cellular component biogenesis cellular component assembly chromosome segregation spindle organization regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular component organization regulation of microtubule-based process regulation of organelle organization regulation of microtubule cytoskeleton organization mitotic sister chromatid cohesion chromosome organization sister chromatid cohesion positive regulation of organelle organization positive regulation of cellular component organization positive regulation of biological process regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of protein polymerization protein-containing complex assembly positive regulation of cellular process protein polymerization positive regulation of microtubule polymerization or depolymerization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization microtubule polymerization positive regulation of supramolecular fiber organization regulation of cellular component biogenesis positive regulation of microtubule polymerization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization negative regulation of microtubule depolymerization regulation of protein-containing complex disassembly regulation of microtubule depolymerization negative regulation of protein-containing complex disassembly negative regulation of supramolecular fiber organization negative regulation of cellular component organization negative regulation of microtubule polymerization or depolymerization regulation of protein depolymerization negative regulation of cytoskeleton organization negative regulation of protein depolymerization negative regulation of organelle organization microtubule nucleation	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton spindle midzone polymeric cytoskeletal fiber microtubule end supramolecular fiber intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton spindle midzone polymeric cytoskeletal fiber microtubule end supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule plus-end mitotic spindle microtubule organizing center cytoplasmic microtubule cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001715	Calponin homology domain	Domain
A, B	IPR004953	EB1, C-terminal	Domain
A, B	IPR027328	Microtubule-associated protein RP/EB	Family
A, B	IPR036133	EB1, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR036872	CH domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.