4DXE | pdb_00004dxe

2.52 Angstrom resolution crystal structure of the acyl-carrier-protein synthase (AcpS)-acyl carrier protein (ACP) protein-protein complex from Staphylococcus aureus subsp. aureus COL

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L [auth I]	d4dxei1	All alpha proteins	Acyl carrier protein-like	ACP-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
L [auth I]	d4dxei2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
K [auth J]	d4dxej1	All alpha proteins	Acyl carrier protein-like	ACP-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
K [auth J]	d4dxej2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
J [auth G]	d4dxeg1	All alpha proteins	Acyl carrier protein-like	ACP-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
J [auth G]	d4dxeg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
I [auth K]	d4dxek1	All alpha proteins	Acyl carrier protein-like	ACP-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
I [auth K]	d4dxek2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
H [auth L]	d4dxel1	All alpha proteins	Acyl carrier protein-like	ACP-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
H [auth L]	d4dxel2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
G [auth H]	d4dxeh1	All alpha proteins	Acyl carrier protein-like	ACP-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
G [auth H]	d4dxeh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
F	d4dxef1	Alpha and beta proteins (a+b)	4'-phosphopantetheinyl transferase	4'-phosphopantetheinyl transferase	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
F	d4dxef2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
E	d4dxee1	Alpha and beta proteins (a+b)	4'-phosphopantetheinyl transferase	4'-phosphopantetheinyl transferase	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
E	d4dxee2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
D	d4dxed1	Alpha and beta proteins (a+b)	4'-phosphopantetheinyl transferase	4'-phosphopantetheinyl transferase	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
D	d4dxed2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
C	d4dxec1	Alpha and beta proteins (a+b)	4'-phosphopantetheinyl transferase	4'-phosphopantetheinyl transferase	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
C	d4dxec2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
B	d4dxeb1	Alpha and beta proteins (a+b)	4'-phosphopantetheinyl transferase	4'-phosphopantetheinyl transferase	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
B	d4dxeb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
A	d4dxea1	Alpha and beta proteins (a+b)	4'-phosphopantetheinyl transferase	4'-phosphopantetheinyl transferase	automated matches	automated matches	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)
A	d4dxea2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus COL ) [TaxId: 93062 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth I]	SCOP2B Superfamily	ACP-like	8074622	3001805	SCOP2B (2022-06-29)
K [auth J]	SCOP2 Family	Acyl-carrier protein (ACP)	8074621	4000857	SCOP2 (2022-06-29)
K [auth J]	SCOP2 Superfamily	ACP-like	8074622	3001805	SCOP2 (2022-06-29)
J [auth G]	SCOP2B Superfamily	ACP-like	8074622	3001805	SCOP2B (2022-06-29)
I [auth K]	SCOP2B Superfamily	ACP-like	8074622	3001805	SCOP2B (2022-06-29)
H [auth L]	SCOP2B Superfamily	ACP-like	8074622	3001805	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	ACP-like	8074622	3001805	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074371	3000948	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074371	3000948	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074371	3000948	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074371	3000948	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074371	3000948	SCOP2B (2022-06-29)
A	SCOP2 Family	Holo-(acyl carrier protein) synthase ACPS	8074370	4003652	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	4'-phosphopantetheinyl transferase	8074371	3000948	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth I]	PP-binding	e4dxeI2	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
K [auth J]	PP-binding	e4dxeJ2	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
J [auth G]	PP-binding	e4dxeG2	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
I [auth K]	PP-binding	e4dxeK2	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
H [auth L]	PP-binding	e4dxeL2	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
G [auth H]	PP-binding	e4dxeH1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
F	ACPS_1	e4dxeF2	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
E	ACPS_1	e4dxeE2	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
D	ACPS_1	e4dxeD2	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
C	ACPS_1	e4dxeC2	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
B	ACPS_1	e4dxeB2	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
A	ACPS_1	e4dxeA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.90.470.20	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22	Chain A	CATH (4.3.0)
E	3.90.470.20	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22	Chain A	CATH (4.3.0)
D	3.90.470.20	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22	Chain A	CATH (4.3.0)
C	3.90.470.20	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22	Chain A	CATH (4.3.0)
B	3.90.470.20	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22	Chain A	CATH (4.3.0)
A	3.90.470.20	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], L [auth I]	PF00550	Phosphopantetheine attachment site (PP-binding)	Phosphopantetheine attachment site	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.	Domain
A, B, C, D, E A, B, C, D, E, F	PF01648	4'-phosphopantetheinyl transferase superfamily (ACPS)	4'-phosphopantetheinyl transferase superfamily	Members of this family transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of Pfam:PF00550. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of ...	Members of this family transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of Pfam:PF00550. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP [1]. This superfamily consists of two subtypes: The ACPS type such as Swiss:P24224 and the Sfp type such as Swiss:P39135. The structure of the Sfp type is known [3], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], L [auth I]	Acyl carrier protein	phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding acyl binding small molecule binding	glycolipid metabolic process lipid A biosynthetic process carbohydrate derivative metabolic process lipid biosynthetic process phospholipid metabolic process phosphate-containing compound metabolic process lipooligosaccharide biosynthetic process phosphorus metabolic process membrane lipid metabolic process carbohydrate derivative biosynthetic process lipooligosaccharide metabolic process liposaccharide metabolic process primary metabolic process glycolipid biosynthetic process glycolipid metabolic process lipid A biosynthetic process carbohydrate derivative metabolic process lipid biosynthetic process phospholipid metabolic process phosphate-containing compound metabolic process lipooligosaccharide biosynthetic process phosphorus metabolic process membrane lipid metabolic process carbohydrate derivative biosynthetic process lipooligosaccharide metabolic process liposaccharide metabolic process primary metabolic process glycolipid biosynthetic process phospholipid biosynthetic process lipid A metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process metabolic process cellular process membrane lipid biosynthetic process lipid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane
A, B, C, D, E A, B, C, D, E, F	acyl-carrier-protein synthase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding holo-[acyl-carrier-protein] synthase activity transferase activity catalytic activity phosphotransferase activity, for other substituted phosphate groups transferase activity, transferring phosphorus-containing groups	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], L [auth I]	IPR006162	Phosphopantetheine attachment site	PTM
G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], L [auth I]	IPR009081	Phosphopantetheine binding ACP domain	Domain
G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], L [auth I]	IPR036736	ACP-like superfamily	Homologous Superfamily
G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], G [auth H], H [auth L], I [auth K], J [auth G], K [auth J], L [auth I]	IPR003231	Acyl carrier protein	Family
A, B, C, D, E A, B, C, D, E, F	IPR037143	4'-phosphopantetheinyl transferase domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002582	Holo-[acyl carrier protein] synthase	Family
A, B, C, D, E A, B, C, D, E, F	IPR004568	Phosphopantetheine-protein transferase domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR008278	4'-phosphopantetheinyl transferase domain	Domain