Avd molecule from Bordetella bacteriophage DGR
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E [auth D] | FERM_M | e4dwlD2 | A: a/b three-layered sandwiches | X: Fusion glycoprotein F2 | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: FERM_M | ECOD (v294.1) |
| D [auth C] | ABC_tran | e4dwlC1 | A: a/b three-layered sandwiches | X: beta-Grasp | H: HTH | T: winged helix domain | F: ABC_tran | ECOD (v294.1) |
| C [auth E] | ABC_tran | e4dwlE1 | A: a/b three-layered sandwiches | X: beta-Grasp | H: HTH | T: winged helix domain | F: ABC_tran | ECOD (v294.1) |
| B | PAS_11 | e4dwlB1 | A: a/b three-layered sandwiches | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: PAS_11 | ECOD (v294.1) |
| A | ABC_tran | e4dwlA1 | A: a/b three-layered sandwiches | X: beta-Grasp | H: HTH | T: winged helix domain | F: ABC_tran | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| E [auth D] | 1.20.1440.60 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | 23S rRNA-intervening sequence | CATH (4.3.0) |
| D [auth C] | 1.20.1440.60 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | 23S rRNA-intervening sequence | CATH (4.3.0) |
| C [auth E] | 1.20.1440.60 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | 23S rRNA-intervening sequence | CATH (4.3.0) |
| B | 1.20.1440.60 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | 23S rRNA-intervening sequence | CATH (4.3.0) |
| A | 1.20.1440.60 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | 23S rRNA-intervening sequence | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A, B, C [auth E], D [auth C], E [auth D] | PF22296 | bAvd-like (bAvd) | bAvd-like | - | Family |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, B, C [auth E], D [auth C], E [auth D] | IPR036583 | 23S rRNA-intervening sequence superfamily | Homologous Superfamily |
| A, B, C [auth E], D [auth C], E [auth D] | IPR055360 | bAvd-like | Domain |














