4DS7 | pdb_00004ds7

Crystal structure of yeast calmodulin bound to the C-terminal fragment of spindle pole body protein Spc110

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4ds7d_	All alpha proteins	EF Hand-like	EF-hand	Calmodulin-like	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)
C	d4ds7c_	All alpha proteins	EF Hand-like	EF-hand	Calmodulin-like	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)
B	d4ds7b_	All alpha proteins	EF Hand-like	EF-hand	Calmodulin-like	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)
A	d4ds7a_	All alpha proteins	EF Hand-like	EF-hand	Calmodulin-like	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	EF-hand_7_8	e4ds7D2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_8	ECOD (1.6)
D	EF-hand_7_5	e4ds7D1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_5	ECOD (1.6)
C	EF-hand_7_8	e4ds7C2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_8	ECOD (1.6)
C	EF-hand_7_5	e4ds7C1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_5	ECOD (1.6)
B	EF-hand_7_8	e4ds7B2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_8	ECOD (1.6)
B	EF-hand_7_5	e4ds7B1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_5	ECOD (1.6)
A	EF-hand_7_8	e4ds7A2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_8	ECOD (1.6)
A	EF-hand_7_5	e4ds7A3	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_5	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	6.10.310.10	Special	Helix non-globular	Rhopdopsin 7-helix transmembrane proteins		CATH (4.3.0)
E	6.10.310.10	Special	Helix non-globular	Rhopdopsin 7-helix transmembrane proteins		CATH (4.3.0)
D	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)
C	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)
B	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)
A	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00036	EF hand domain (EF-hand_1)	EF hand domain	The EF-hands can be divided into two classes: signalling proteins and buffering/transport proteins. The first group is the largest and includes the most well-known members of the family such as calmodulin, troponin C and S100B. These proteins typica ...	The EF-hands can be divided into two classes: signalling proteins and buffering/transport proteins. The first group is the largest and includes the most well-known members of the family such as calmodulin, troponin C and S100B. These proteins typically undergo a calcium-dependent conformational change which opens a target binding site. The latter group is represented by calbindin D9k and do not undergo calcium dependent conformational changes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	Spindle pole body component 110	protein-containing complex binding binding protein binding calmodulin binding structural constituent of cytoskeleton structural molecule activity	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis mitotic spindle elongation spindle elongation microtubule cytoskeleton organization mitotic cell cycle mitotic sister chromatid segregation cell cycle chromosome segregation cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis mitotic spindle elongation spindle elongation microtubule cytoskeleton organization mitotic cell cycle mitotic sister chromatid segregation cell cycle chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic spindle organization organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation microtubule-based process cytoskeleton organization gamma-tubulin complex localization localization gamma-tubulin complex localization to mitotic spindle pole body macromolecule localization gamma-tubulin complex localization to nuclear side of mitotic spindle pole body protein-containing complex localization positive regulation of organelle organization regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly microtubule polymerization or depolymerization positive regulation of protein polymerization positive regulation of cellular process protein polymerization regulation of biological process positive regulation of microtubule nucleation positive regulation of microtubule polymerization or depolymerization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization biological regulation regulation of microtubule-based process microtubule polymerization regulation of cellular component biogenesis positive regulation of supramolecular fiber organization regulation of microtubule nucleation regulation of organelle organization microtubule nucleation regulation of microtubule polymerization regulation of protein polymerization positive regulation of microtubule polymerization regulation of supramolecular fiber organization supramolecular fiber organization regulation of microtubule cytoskeleton organization sexual reproduction reproductive process conjugation with cellular fusion organelle fusion nucleus organization karyogamy karyogamy involved in conjugation with cellular fusion protein localization to microtubule cytoskeleton protein localization to cytoskeleton protein localization to organelle protein localization to spindle pole body protein localization to mitotic spindle pole body protein localization to microtubule organizing center intracellular protein localization	intracellular anatomical structure intracellular membraneless organelle intracellular organelle microtubule organizing center cellular anatomical structure cytoskeleton central plaque of spindle pole body organelle membraneless organelle spindle pole body microtubule cytoskeleton inner plaque of spindle pole body cytoplasm membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle intracellular organelle microtubule organizing center cellular anatomical structure cytoskeleton central plaque of spindle pole body organelle membraneless organelle spindle pole body microtubule cytoskeleton inner plaque of spindle pole body cytoplasm membrane-bounded organelle nucleus intracellular membrane-bounded organelle
A, B, C, D	Calmodulin	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	-	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton myosin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle myosin II complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H	IPR040593	Spindle pole body component 110, C-terminal	Domain
A, B, C, D	IPR050230	Calmodulin/Myosin light chain/Troponin C-like	Family
A, B, C, D	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A, B, C, D	IPR002048	EF-hand domain	Domain
A, B, C, D	IPR011992	EF-hand domain pair	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.