4D52 | pdb_00004d52

CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH L-GALACTOPYRANOSE.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Fucose-specific lectin	8078196	3001933	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Fucose-specific lectin	8078196	3001933	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Fucose-specific lectin	8078196	3001933	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Fucose-specific lectin	8078196	3001933	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Flavodoxin_2	e4d52C1	A: alpha bundles	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: Flavodoxin_2	ECOD (develop294)
D	Flavodoxin_2	e4d52D1	A: alpha bundles	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: Flavodoxin_2	ECOD (develop294)
B	Flavodoxin_2	e4d52B1	A: alpha bundles	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: Flavodoxin_2	ECOD (develop294)
A	Flavodoxin_2	e4d52A1	A: alpha bundles	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: Flavodoxin_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.120.10.70	Mainly Beta	6 Propeller	Neuraminidase	Fucose-specific lectin	CATH (4.3.0)
D	2.120.10.70	Mainly Beta	6 Propeller	Neuraminidase	Fucose-specific lectin	CATH (4.3.0)
B	2.120.10.70	Mainly Beta	6 Propeller	Neuraminidase	Fucose-specific lectin	CATH (4.3.0)
A	2.120.10.70	Mainly Beta	6 Propeller	Neuraminidase	Fucose-specific lectin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF07938	Fungal fucose-specific lectin (Fungal_lectin)	Fungal fucose-specific lectin	-	Repeat
B, D	PF07938	Fungal fucose-specific lectin (Fungal_lectin)	Fungal fucose-specific lectin	-	Repeat
A	PF07938	Fungal fucose-specific lectin (Fungal_lectin)	Fungal fucose-specific lectin	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	FUCOSE-SPECIFIC LECTIN FLEA	binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell adhesion of symbiont to host adhesion of symbiont to host cell surface via host glycoprotein biological process involved in interaction with host biological process involved in symbiotic interaction	-
B, D	FUCOSE-SPECIFIC LECTIN FLEA	binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell adhesion of symbiont to host adhesion of symbiont to host cell surface via host glycoprotein biological process involved in interaction with host biological process involved in symbiotic interaction	-
A	FUCOSE-SPECIFIC LECTIN FLEA	binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell adhesion of symbiont to host adhesion of symbiont to host cell surface via host glycoprotein biological process involved in interaction with host biological process involved in symbiotic interaction	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR012475	Fucose-specific lectin	Family
B, D	IPR012475	Fucose-specific lectin	Family
A	IPR012475	Fucose-specific lectin	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C	CSD	Parent Component: CYS RESID: AA0262 PSI-MOD : L-cysteine sulfinic acid MOD:00267
B, D	CSD	Parent Component: CYS RESID: AA0262 , AA0262 PSI-MOD : L-cysteine sulfinic acid MOD:00267 , L-cysteine sulfinic acid MOD:00267

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.