4D1M | pdb_00004d1m

Tetramerization domain of zebrafish p53 (crystal form II)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d4d1ml_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
K	d4d1mk_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
J	d4d1mj_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
I	d4d1mi_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
H	d4d1mh_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
G	d4d1mg_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
F	d4d1mf_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
E	d4d1me_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
D	d4d1md_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
C	d4d1mc_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
B	d4d1mb_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
A	d4d1ma_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	p53 tetramerization domain	8072263	3000414	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	P53_tetramer	e4d1mL1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
K	P53_tetramer	e4d1mK1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
J	P53_tetramer	e4d1mJ1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
I	P53_tetramer	e4d1mI1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
H	P53_tetramer	e4d1mH1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
G	P53_tetramer	e4d1mG1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
F	P53_tetramer	e4d1mF1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
E	P53_tetramer	e4d1mE1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
D	P53_tetramer	e4d1mD1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
C	P53_tetramer	e4d1mC1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
B	P53_tetramer	e4d1mB1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)
A	P53_tetramer	e4d1mA1	A: alpha duplicates or obligate multimers	X: p53 tetramerization domain (From Topology)	H: p53 tetramerization domain (From Topology)	T: p53 tetramerization domain	F: P53_tetramer	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
K	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)
H	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)
G	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)
F	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)
E	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)
C	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)
B	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF07710	P53 tetramerisation motif (P53_tetramer)	P53 tetramerisation motif	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	CELLULAR TUMOR ANTIGEN P53	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity cation binding ion binding metal ion binding small molecule binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity cation binding ion binding metal ion binding small molecule binding identical protein binding protein binding	developmental process epithelium development anatomical structure development tissue development cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein tetramerization protein-containing complex assembly cellular process cellular component organization or biogenesis apoptotic process developmental process epithelium development anatomical structure development tissue development cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein tetramerization protein-containing complex assembly cellular process cellular component organization or biogenesis apoptotic process cell death programmed cell death regulation of biological process regulation of cellular process regulation of apoptotic process biological regulation regulation of programmed cell death anatomical structure morphogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002117	p53 tumour suppressor family	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012346	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011615	p53, DNA-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR057064	p53, central conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036674	p53-like tetramerisation domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008967	p53-like transcription factor, DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR010991	p53, tetramerisation domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.