4COG

Crystal structure of kynurenine formamidase from Burkholderia cenocepacia

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4coga_	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	Putative cyclase	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
B	d4cogb_	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	Putative cyclase	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
C	d4cogc_	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	Putative cyclase	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
D	d4cogd_	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	Putative cyclase	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cyclase	e4cogA1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: Cyclase	ECOD (1.6)
B	Cyclase	e4cogB1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: Cyclase	ECOD (1.6)
C	Cyclase	e4cogC1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: Cyclase	ECOD (1.6)
D	Cyclase	e4cogD1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: Cyclase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.50.30.50	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
B	3.50.30.50	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
C	3.50.30.50	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
D	3.50.30.50	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF04199	Putative cyclase (Cyclase)	Putative cyclase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	KYNURENINE FORMAMIDASE	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding formamidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds arylformamidase activity	catabolic process oxoacid metabolic process aromatic amino acid family catabolic process indole-containing compound metabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process cellular catabolic process non-proteinogenic amino acid metabolic process organic substance metabolic process cellular ketone metabolic process carboxylic acid catabolic process indolalkylamine metabolic process catabolic process oxoacid metabolic process aromatic amino acid family catabolic process indole-containing compound metabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process cellular catabolic process non-proteinogenic amino acid metabolic process organic substance metabolic process cellular ketone metabolic process carboxylic acid catabolic process indolalkylamine metabolic process small molecule metabolic process amino acid catabolic process organonitrogen compound catabolic process organonitrogen compound metabolic process aromatic amino acid metabolic process benzene-containing compound metabolic process cellular metabolic process carboxylic acid metabolic process primary metabolic process organic cyclic compound catabolic process tryptophan metabolic process organic cyclic compound metabolic process amine metabolic process kynurenine metabolic process tryptophan catabolic process to kynurenine alpha-amino acid catabolic process indole-containing compound catabolic process tryptophan catabolic process metabolic process cellular process small molecule catabolic process organic substance catabolic process biogenic amine metabolic process anthranilate metabolic process monocarboxylic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR017484	Kynurenine formamidase, bacteria	Family
A, B, C, D	IPR007325	Kynurenine formamidase/cyclase-like	Family
A, B, C, D	IPR037175	Kynurenine formamidase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.