4CKL
Structure of 55 kDa N-terminal domain of E. coli DNA gyrase A subunit with simocyclinone D8 bound
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4ckla_ | Multi-domain proteins (alpha and beta) | Type II DNA topoisomerase C-terminal domain-like | Type II DNA topoisomerase C-terminal domain-like | Type II DNA topoisomerase C-terminal domain-like | DNA Gyrase A | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d4cklb_ | Multi-domain proteins (alpha and beta) | Type II DNA topoisomerase C-terminal domain-like | Type II DNA topoisomerase C-terminal domain-like | Type II DNA topoisomerase C-terminal domain-like | DNA Gyrase A | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DNA_topoisoIV_1st | e4cklA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: DNA_topoisoIV_1st | ECOD (1.6) |
A | DNA_topoisoIV_3rd | e4cklA3 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: DNA_topoisoIV_3rd | ECOD (1.6) |
A | DNA_topoisoIV_2nd_1 | e4cklA2 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: DNA_topoisoIV_2nd_1 | ECOD (1.6) |
B | DNA_topoisoIV_1st | e4cklB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: DNA_topoisoIV_1st | ECOD (1.6) |
B | DNA_topoisoIV_3rd | e4cklB3 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: DNA_topoisoIV_3rd | ECOD (1.6) |
B | DNA_topoisoIV_2nd_1 | e4cklB2 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: DNA_topoisoIV_2nd_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.199.10 | Alpha Beta | Alpha-Beta Complex | Topoisomerase II | domain 5 | CATH (4.3.0) |
A | 1.10.268.10 | Mainly Alpha | Orthogonal Bundle | Topoisomerase | domain 3 | CATH (4.3.0) |
B | 3.90.199.10 | Alpha Beta | Alpha-Beta Complex | Topoisomerase II | domain 5 | CATH (4.3.0) |
B | 1.10.268.10 | Mainly Alpha | Orthogonal Bundle | Topoisomerase | domain 3 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035516 | DNA gyrase/topoisomerase IV, subunit A, C-terminal | Homologous Superfamily | |
IPR050220 | Type II DNA Topoisomerases | Family | |
IPR013760 | DNA topoisomerase, type IIA-like domain superfamily | Homologous Superfamily | |
IPR013757 | DNA topoisomerase, type IIA, alpha-helical domain superfamily | Homologous Superfamily | |
IPR013758 | DNA topoisomerase, type IIA, domain A, alpha-beta | Homologous Superfamily | |
IPR005743 | DNA gyrase, subunit A | Family | |
IPR006691 | DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat | Repeat | |
IPR002205 | DNA topoisomerase, type IIA, domain A | Domain |