4CC7 | pdb_00004cc7

Crystal structure of the sixth or C-terminal SH3 domain of human Tuba in complex with proline-rich peptides of N-WASP. Space group P41

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	SH3_1	e4cc7E1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
G	SH3_1	e4cc7G1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
I	SH3_1	e4cc7I1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
K	SH3_1	e4cc7K1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
M	SH3_1	e4cc7M1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
C	SH3_1	e4cc7C1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
A	SH3_1	e4cc7A1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
G	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
I	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
K	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
M	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
C	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I A, C, E, G, I, K, M	PF07653	Variant SH3 domain (SH3_2)	Variant SH3 domain	SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I A, C, E, G, I, K, M	DYNAMIN-BINDING PROTEIN	GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis cilium organization cell projection assembly developmental process organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis cilium organization cell projection assembly developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis cellular response to stimulus regulation of signaling regulation of cellular process small GTPase-mediated signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication signal transduction	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen Golgi apparatus subcompartment Golgi apparatus organelle subcompartment endomembrane system Golgi stack cytoplasm cell-cell junction anchoring junction cell junction cytosol presynapse synapse nucleoplasm cytoskeleton nuclear body
B, D, F, H, J B, D, F, H, J, L, N	NEURAL WISKOTT-ALDRICH SYNDROME PROTEIN	GTPase regulator activity enzyme regulator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cytoskeletal protein binding actin binding protein binding binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cell division plasma membrane tubulation membrane organization regulation of biological process regulation of cellular component organization regulation of cellular process negative regulation of cellular component organization cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cell division plasma membrane tubulation membrane organization regulation of biological process regulation of cellular component organization regulation of cellular process negative regulation of cellular component organization biological regulation negative regulation of biological process negative regulation of membrane tubulation regulation of plasma membrane organization plasma membrane organization negative regulation of cellular process endomembrane system organization regulation of membrane tubulation protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization actin filament organization organelle organization actin filament-based process supramolecular fiber organization cytoskeleton organization localization macromolecule localization protein-containing complex localization negative regulation of mononuclear cell migration negative regulation of locomotion regulation of cell motility regulation of lymphocyte migration regulation of cell migration cell migration regulation of immune system process negative regulation of lymphocyte migration cell motility regulation of mononuclear cell migration negative regulation of cell migration locomotion regulation of leukocyte migration lymphocyte migration leukocyte migration negative regulation of leukocyte migration negative regulation of immune system process immune system process regulation of locomotion mononuclear cell migration negative regulation of cell motility vesicle budding from membrane transport establishment of localization vesicle-mediated transport vesicle organization regulation of localization regulation of protein localization intracellular protein localization biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus multicellular organismal process cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development cell differentiation anatomical structure development dendritic spine morphogenesis synapse organization system development developmental process dendritic spine development plasma membrane bounded cell projection organization dendritic spine organization postsynapse organization dendrite morphogenesis nervous system development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis cell junction organization neuron development neuron projection organization filopodium assembly positive regulation of cellular component organization positive regulation of biological process regulation of filopodium assembly plasma membrane bounded cell projection assembly positive regulation of cell projection organization positive regulation of filopodium assembly positive regulation of cellular process positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly regulation of cellular component biogenesis regulation of plasma membrane bounded cell projection assembly cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly vesicle transport along actin filament vesicle cytoskeletal trafficking vesicle localization establishment of organelle localization cellular localization establishment of vesicle localization intracellular transport actin filament-based movement organelle localization establishment of localization in cell cytoskeleton-dependent intracellular transport actin filament-based transport positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process regulation of postsynapse organization regulation of synapse organization regulation of synapse structure or activity regulation of biological quality import into cell positive regulation of endocytosis clathrin-dependent endocytosis positive regulation of receptor-mediated endocytosis regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport positive regulation of transport positive regulation of clathrin-dependent endocytosis receptor-mediated endocytosis endocytosis regulation of clathrin-dependent endocytosis spindle localization cell cycle cell cycle process	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular organelle intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol cell periphery plasma membrane membrane cell cortex cortical cytoskeleton actin cap cortical actin cytoskeleton synapse cell junction glutamatergic synapse organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane cytoplasmic vesicle intracellular vesicle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane endocytic vesicle membrane endocytic vesicle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K, M	IPR004148	BAR domain	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR035820	Dynamin-binding protein, first C-terminal SH3 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR035819	Dynamin-binding protein, third N-terminal SH3 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR000219	Dbl homology domain	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M	IPR051492	Dynamin-binding and Rho GEF	Family
A, C, E, G, I A, C, E, G, I, K, M	IPR001331	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Conserved Site
A, C, E, G, I A, C, E, G, I, K, M	IPR035818	Dynamin-binding protein, second N-terminal SH3 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR001452	SH3 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR035899	Dbl homology (DH) domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M	IPR035817	Dynamin-binding protein, first N-terminal SH3 domain	Domain
B, D, F, H, J B, D, F, H, J, L, N	IPR000095	CRIB domain	Domain
B, D, F, H, J B, D, F, H, J, L, N	IPR000697	WH1/EVH1 domain	Domain
B, D, F, H, J B, D, F, H, J, L, N	IPR036936	CRIB domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N	IPR011993	PH-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N	IPR003124	WH2 domain	Domain
B, D, F, H, J B, D, F, H, J, L, N	IPR011026	Actin nucleation-promoting factor WAS, C-terminal	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N	IPR033927	WASP family, EVH1 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C, E, G, I A, C, E, G, I, K, M	Pharos: Q6XZF7	atypical teratoid rhabdoid tumor glioblastoma malignant mesothelioma psoriasis B-cell chronic lymphocytic leukemia interstitial cystitis non-alcoholic fatty liver disease tuberculosis cataract lung cancer osteosarcoma
B, D, F, H, J B, D, F, H, J, L, N	Pharos: O00401	Wiskott-Aldrich syndrome adrenal cortex carcinoma breast cancer Drug-Induced Acute Liver Injury malignant colon neoplasm ovarian cancer rheumatoid arthritis astrocytic tumor medulloblastoma periodontitis spina bifida atypical teratoid rhabdoid tumor drug-induced liver injury large cell medulloblastoma osteosarcoma Wiskott-Aldrich syndrome adrenal cortex carcinoma breast cancer Drug-Induced Acute Liver Injury malignant colon neoplasm ovarian cancer rheumatoid arthritis astrocytic tumor medulloblastoma periodontitis spina bifida atypical teratoid rhabdoid tumor drug-induced liver injury large cell medulloblastoma osteosarcoma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.