4C4U | pdb_00004c4u

Superoxide reductase (Neelaredoxin) from Archaeoglobus fulgidus E12Q mutant in the reduced form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d4c4up_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
O	d4c4uo_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
N	d4c4un_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
M	d4c4um_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
L	d4c4ul_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
K	d4c4uk_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
J	d4c4uj_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
I	d4c4ui_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
H	d4c4uh_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
G	d4c4ug_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
F	d4c4uf_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
E	d4c4ue_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
D	d4c4ud_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
C	d4c4uc_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
B	d4c4ub_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
A	d4c4ua_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	Superoxide reductase-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	PDEase_I	e4c4uP1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
O	PDEase_I	e4c4uO1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
N	PDEase_I	e4c4uN1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
M	PDEase_I	e4c4uM1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
L	PDEase_I	e4c4uL1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
K	PDEase_I	e4c4uK1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
J	PDEase_I	e4c4uJ1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
I	PDEase_I	e4c4uI1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
H	PDEase_I	e4c4uH1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
G	PDEase_I	e4c4uG1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
F	PDEase_I	e4c4uF1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
E	PDEase_I	e4c4uE1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
D	PDEase_I	e4c4uD1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
C	PDEase_I	e4c4uC1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
B	PDEase_I	e4c4uB1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)
A	PDEase_I	e4c4uA1	A: a/b three-layered sandwiches	X: avirulence protein AvrPiz-t homologs	H: avirulence protein AvrPiz-t homologs	T: avirulence protein AvrPiz-t homologs	F: PDEase_I	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
O	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
N	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
M	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
L	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
K	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
J	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
I	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
H	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
G	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
F	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
E	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
D	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
C	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
B	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
A	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF01880	Desulfoferrodoxin (Desulfoferrodox)	Desulfoferrodoxin	Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulforedoxin from Desulfovibrio gigas and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this ...	Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulforedoxin from Desulfovibrio gigas and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this rather unusual combination of active centres, this novel protein is named desulfoferrodoxin [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	SUPEROXIDE REDUCTASE	oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity superoxide reductase activity catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR051233	Desulfoferrodoxin superoxide reductase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036073	Desulfoferrodoxin, ferrous iron-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR002742	Desulfoferrodoxin, ferrous iron-binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.