4BJN | pdb_00004bjn

Crystal structure of the flax-rust effector AvrM-A

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	EUF08015	e4bjnH1	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08015	ECOD (1.6)
H	EUF08016	e4bjnH2	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08016	ECOD (1.6)
G	EUF08015	e4bjnG1	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08015	ECOD (1.6)
G	EUF08016	e4bjnG2	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08016	ECOD (1.6)
F	EUF08015	e4bjnF1	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08015	ECOD (1.6)
F	EUF08016	e4bjnF2	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08016	ECOD (1.6)
E	EUF08015	e4bjnE1	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08015	ECOD (1.6)
E	EUF08016	e4bjnE2	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08016	ECOD (1.6)
D	EUF08015	e4bjnD1	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08015	ECOD (1.6)
D	EUF08016	e4bjnD2	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08016	ECOD (1.6)
C	EUF08015	e4bjnC1	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08015	ECOD (1.6)
C	EUF08016	e4bjnC2	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08016	ECOD (1.6)
B	EUF08015	e4bjnB1	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08015	ECOD (1.6)
B	EUF08016	e4bjnB2	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08016	ECOD (1.6)
A	EUF08015	e4bjnA1	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08015	ECOD (1.6)
A	EUF08016	e4bjnA2	A: alpha arrays	X: Flax-rust effector AvrM (From Topology)	H: Flax-rust effector AvrM (From Topology)	T: Flax-rust effector AvrM	F: EUF08016	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.20.58.1680	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)
G	1.20.58.1680	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)
F	1.20.58.1680	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)
E	1.20.58.1680	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)
D	1.20.58.1680	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)
C	1.20.58.1680	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)
B	1.20.58.1680	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)
A	1.20.58.1680	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF18241	Flax-rust effector AvrM-A (AvrM-A)	Flax-rust effector AvrM-A	This domain is found in AvrM-A present in Melampsora lini. AvrM-A is a natural variant of AvrM which is a secreted effector protein that can internalize into plant cells in the absence of the pathogen and bind to phosphoinositides. AvrM results in ef ...	This domain is found in AvrM-A present in Melampsora lini. AvrM-A is a natural variant of AvrM which is a secreted effector protein that can internalize into plant cells in the absence of the pathogen and bind to phosphoinositides. AvrM results in effector-triggered immunity. This domain makes up part of the C-terminal region, which is highly conserved in AvrM. The domain is required for M-dependent effector-triggered immunity [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR041353	Flax-rust effector AvrM, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR040489	Flax-rust effector AvrM-A	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.