4B3N
Crystal structure of rhesus TRIM5alpha PRY/SPRY domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8078223 | 3000120 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8078223 | 3000120 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SPRY | e4b3nA2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
A | SBP_bac_1_C | e4b3nA3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C | ECOD (1.6) |
A | SBP_bac_1_N_1 | e4b3nA1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
B | SPRY | e4b3nB4 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
B | SBP_bac_1_C | e4b3nB2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C | ECOD (1.6) |
B | SBP_bac_1_N_1 | e4b3nB1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.920 | Mainly Beta | Sandwich | Jelly Rolls | SPRY domain | CATH (4.3.0) |
B | 2.60.120.920 | Mainly Beta | Sandwich | Jelly Rolls | SPRY domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00622 | SPRY domain (SPRY) | SPRY domain | - | Family | |
PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006061 | Solute-binding family 1, conserved site | Conserved Site | |
IPR006060 | Maltose/Cyclodextrin ABC transporter, substrate-binding protein | Family | |
IPR006059 | Bacterial-type extracellular solute-binding protein | Family | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR043136 | B30.2/SPRY domain superfamily | Homologous Superfamily | |
IPR003877 | SPRY domain | Domain | |
IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site | |
IPR000315 | B-box-type zinc finger | Domain | |
IPR001870 | B30.2/SPRY domain | Domain | |
IPR027370 | Zinc finger, RING-type, eukaryotic | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR003879 | Butyrophylin-like, SPRY domain | Domain | |
IPR001841 | Zinc finger, RING-type | Domain |