4AM3
Crystal structure of C. crescentus PNPase bound to RNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03726 | e4am3A4 | A: alpha arrays | X: HTH | H: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 (From Topology) | T: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | F: PF03726 | ECOD (1.6) |
A | PF01138 | e4am3A2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF01138 | ECOD (1.6) |
A | PF03725 | e4am3A5 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: PF03725 | ECOD (1.6) |
A | F_UNCLASSIFIED | e4am3A7 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF03726 | e4am3B4 | A: alpha arrays | X: HTH | H: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 (From Topology) | T: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | F: PF03726 | ECOD (1.6) |
B | PF01138 | e4am3B2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF01138 | ECOD (1.6) |
B | PF03725 | e4am3B5 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: PF03725 | ECOD (1.6) |
B | F_UNCLASSIFIED | e4am3B7 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF03726 | e4am3C4 | A: alpha arrays | X: HTH | H: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 (From Topology) | T: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | F: PF03726 | ECOD (1.6) |
C | PF01138 | e4am3C2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF01138 | ECOD (1.6) |
C | PF03725 | e4am3C5 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: PF03725 | ECOD (1.6) |
C | F_UNCLASSIFIED | e4am3C7 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03726 | Polyribonucleotide nucleotidyltransferase, RNA binding domain (PNPase) | Polyribonucleotide nucleotidyltransferase, RNA binding domain | This family contains the RNA binding domain of Polyribonucleotide nucleotidyltransferase (PNPase) PNPase is involved in mRNA degradation in a 3'-5' direction. | Domain | |
PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |
PF00013 | KH domain (KH_1) | KH domain | KH motifs bind RNA in vitro. Autoantibodies to Nova, a KH domain protein, cause paraneoplastic opsoclonus ataxia. | Domain | |
PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain | |
PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003029 | S1 domain | Domain | |
IPR004087 | K Homology domain | Domain | |
IPR015848 | Polyribonucleotide nucleotidyltransferase, RNA-binding domain | Domain | |
IPR012162 | Polyribonucleotide nucleotidyltransferase | Family | |
IPR027408 | PNPase/RNase PH domain superfamily | Homologous Superfamily | |
IPR001247 | Exoribonuclease, phosphorolytic domain 1 | Domain | |
IPR036612 | K Homology domain, type 1 superfamily | Homologous Superfamily | |
IPR036456 | Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily | Homologous Superfamily | |
IPR036345 | Exoribonuclease, PH domain 2 superfamily | Homologous Superfamily | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily | |
IPR004088 | K Homology domain, type 1 | Domain | |
IPR015847 | Exoribonuclease, phosphorolytic domain 2 | Domain |