4AKT | pdb_00004akt

PatG macrocyclase in complex with peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Subtilisin-like	8099526	3000226	SCOP2B (2022-06-29)
A	SCOP2 Family	Subtilases	8099525	4000409	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Subtilisin-like	8099526	3000226	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Peptidase_S8	e4aktB3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like (From Topology)	T: Subtilisin-like	F: Peptidase_S8	ECOD (1.6)
A	Peptidase_S8	e4aktA3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like (From Topology)	T: Subtilisin-like	F: Peptidase_S8	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
A	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	THIAZOLINE OXIDASE/SUBTILISIN-LIKE PROTEASE	oxidoreductase activity catalytic activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity endopeptidase activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-
C	SUBSTRATE ANALOGUE	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023828	Peptidase S8, subtilisin, Ser-active site	Active Site
A, B	IPR029479	Nitroreductase	Domain
A, B	IPR040483	PatG domain	Domain
A, B	IPR000209	Peptidase S8/S53 domain	Domain
A, B	IPR052544	Bacteriocin Processing Enzyme	Family
A, B	IPR034056	PatG/PatA-like domain	Domain
A, B	IPR023830	Peptidase S8A, PatG	Family
A, B	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
A, B	IPR040636	PatG, C-terminal	Domain
A, B	IPR000415	Nitroreductase-like	Homologous Superfamily
A, B	IPR040776	ThcOx, helix turn helix domain	Domain
A, B	IPR020051	SagB-type dehydrogenase domain	Domain
A, B	IPR054488	Cyanobactin oxidase ThcOx, second domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.