3ZDV | pdb_00003zdv

Crystal structure of the LecB lectin from Pseudomonas aeruginosa in complex with Methyl 6-(2,4,6-trimethylphenylsulfonylamido)-6-deoxy-alpha-D-mannopyranoside

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3zdvd_	All beta proteins	Calcium-mediated lectin	Calcium-mediated lectin	Calcium-mediated lectin	Fucose-binding lectin II (PA-LII)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
C	d3zdvc_	All beta proteins	Calcium-mediated lectin	Calcium-mediated lectin	Calcium-mediated lectin	Fucose-binding lectin II (PA-LII)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
B	d3zdvb_	All beta proteins	Calcium-mediated lectin	Calcium-mediated lectin	Calcium-mediated lectin	Fucose-binding lectin II (PA-LII)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d3zdva_	All beta proteins	Calcium-mediated lectin	Calcium-mediated lectin	Calcium-mediated lectin	Fucose-binding lectin II (PA-LII)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ldh_1_N	e3zdvD1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-pinwheel	T: beta-pinwheel	F: Ldh_1_N	ECOD (v294.1)
C	Ldh_1_N	e3zdvC1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-pinwheel	T: beta-pinwheel	F: Ldh_1_N	ECOD (v294.1)
B	Ldh_1_N	e3zdvB1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-pinwheel	T: beta-pinwheel	F: Ldh_1_N	ECOD (v294.1)
A	Ldh_1_N	e3zdvA1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-pinwheel	T: beta-pinwheel	F: Ldh_1_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.120.400	Mainly Beta	Sandwich	Jelly Rolls	Calcium-mediated lectin	CATH (4.3.0)
C	2.60.120.400	Mainly Beta	Sandwich	Jelly Rolls	Calcium-mediated lectin	CATH (4.3.0)
B	2.60.120.400	Mainly Beta	Sandwich	Jelly Rolls	Calcium-mediated lectin	CATH (4.3.0)
A	2.60.120.400	Mainly Beta	Sandwich	Jelly Rolls	Calcium-mediated lectin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF07472	Fucose-binding lectin II (PA-IIL) (PA-IIL)	Fucose-binding lectin II (PA-IIL)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	FUCOSE-BINDING LECTIN PA-IIL	binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	cell aggregation biofilm formation biological process involved in intraspecies interaction between organisms single-species biofilm formation cellular process aggregation of unicellular organisms	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036684	Calcium-mediated lectin superfamily	Homologous Superfamily
A, B, C, D	IPR010907	Calcium-mediated lectin	Domain
A, B, C, D	IPR016927	Lectin, sugar-binding	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.