3VDM | pdb_00003vdm

Crystal Structure of VldE, the pseudo-glycosyltransferase which catalyzes non-glycosidic C-N coupling in Validamycin A biosynthesis


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BERAP1_Ce3vdmB1 A: a/b three-layered sandwichesX: ACP-likeH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: ERAP1_CECOD (v294.1)
ARh5e3vdmA1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-likeT: Restriction endonuclease-likeF: Rh5ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.2000 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glycogen Phosphorylase BCATH (4.3.0)
A3.40.50.2000 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glycogen Phosphorylase BCATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001830Glycosyl transferase, family 20Family