3ULR | pdb_00003ulr

Lysozyme contamination facilitates crystallization of a hetero-trimericCortactin:Arg:Lysozyme complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3ulrb1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d3ulrb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	SH3-domain	8065192	4000369	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	SH3-domain	8065193	3000153	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Lysozyme-like	8037428	3001879	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SH3_1	e3ulrB1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
A	Lys	e3ulrA1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Lys	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
A	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF14604	Variant SH3 domain (SH3_9)	Variant SH3 domain		Domain
A	PF00062	C-type lysozyme/alpha-lactalbumin family (Lys)	C-type lysozyme/alpha-lactalbumin family	Alpha-lactalbumin is the regulatory subunit of lactose synthase, changing the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. C-type lysozymes are secreted bacteriolytic enzymes that cleave the peptidoglycan of bac ...	Alpha-lactalbumin is the regulatory subunit of lactose synthase, changing the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. C-type lysozymes are secreted bacteriolytic enzymes that cleave the peptidoglycan of bacterial cell walls. Structure is a multi-domain, mixed alpha and beta fold, containing four conserved disulfide bonds.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Abelson tyrosine-protein kinase 2	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding phosphoprotein binding phosphotyrosine residue binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding phosphoprotein binding phosphotyrosine residue binding protein phosphorylated amino acid binding protein tyrosine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups magnesium ion binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity non-membrane spanning protein tyrosine kinase activity enzyme binding actin monomer binding	positive regulation of cytosolic calcium ion concentration biological regulation regulation of biological quality regulation of establishment of T cell polarity regulation of establishment or maintenance of cell polarity multicellular organismal process establishment of lymphocyte polarity regulation of cellular process regulation of leukocyte activation establishment of T cell polarity positive regulation of biological process regulation of cell activation positive regulation of leukocyte cell-cell adhesion establishment or maintenance of cell polarity positive regulation of cytosolic calcium ion concentration biological regulation regulation of biological quality regulation of establishment of T cell polarity regulation of establishment or maintenance of cell polarity multicellular organismal process establishment of lymphocyte polarity regulation of cellular process regulation of leukocyte activation establishment of T cell polarity positive regulation of biological process regulation of cell activation positive regulation of leukocyte cell-cell adhesion establishment or maintenance of cell polarity lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation positive regulation of establishment of T cell polarity positive regulation of leukocyte activation regulation of multicellular organismal process regulation of immune system process regulation of cell-cell adhesion positive regulation of immune system process positive regulation of cellular process regulation of biological process positive regulation of T cell activation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation establishment of cell polarity regulation of establishment of cell polarity immune system process regulation of leukocyte cell-cell adhesion positive regulation of multicellular organismal process cellular process regulation of lymphocyte activation behavior exploration behavior macromolecule modification metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process regulation of localization import into cell regulation of cellular component organization regulation of transport transport regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport cellular component organization localization cellular component organization or biogenesis endocytosis regulation of endocytosis regulation of cytoskeleton organization regulation of actin filament-based process actin cytoskeleton organization regulation of organelle organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cytoskeleton organization cellular response to stimulus response to lipid response to stimulus response to oxygen-containing compound cellular response to oxygen-containing compound response to retinoic acid cellular response to chemical stimulus cellular response to retinoic acid response to chemical cellular response to lipid signaling signal transduction cell communication response to oxidative stress cellular response to stress response to stress cellular response to oxidative stress cellular response to chemical stress regulation of neuron projection development positive regulation of cellular component organization cellular developmental process cell projection organization cell development neuron projection development neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development cell differentiation anatomical structure development positive regulation of cell projection organization system development developmental process plasma membrane bounded cell projection organization regulation of cell projection organization nervous system development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization protein phosphorylation phosphorylation peptidyl-tyrosine modification peptidyl-amino acid modification phosphate-containing compound metabolic process peptidyl-tyrosine phosphorylation phosphorus metabolic process cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway ERBB signaling pathway epidermal growth factor receptor signaling pathway enzyme-linked receptor protein signaling pathway small GTPase-mediated signal transduction negative regulation of Rho protein signal transduction negative regulation of signaling regulation of small GTPase mediated signal transduction negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction intracellular signal transduction Rho protein signal transduction negative regulation of cell communication regulation of intracellular signal transduction intracellular signaling cassette negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of small GTPase mediated signal transduction regulation of Rho protein signal transduction negative regulation of signal transduction regulation of response to stimulus regulation of cell communication phospholipase C-activating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway positive regulation of locomotion regulation of cell motility regulation of lymphocyte migration positive regulation of cell migration positive regulation of cell motility regulation of cell migration positive regulation of mononuclear cell migration cell migration cell motility regulation of mononuclear cell migration locomotion positive regulation of lymphocyte migration regulation of leukocyte migration positive regulation of T cell migration lymphocyte migration positive regulation of leukocyte migration leukocyte migration regulation of locomotion regulation of T cell migration mononuclear cell migration T cell migration catabolic process autophagy regulation of catabolic process regulation of autophagy process utilizing autophagic mechanism regulation of metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol cell periphery plasma membrane membrane
B	Src substrate cortactin	profilin binding protein binding binding proline-rich region binding protein-containing complex binding Arp2/3 complex binding	chemotaxis positive regulation of locomotion regulation of biological process response to stimulus regulation of response to external stimulus biological regulation positive regulation of biological process response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus positive regulation of response to external stimulus taxis regulation of response to stimulus response to chemical chemotaxis positive regulation of locomotion regulation of biological process response to stimulus regulation of response to external stimulus biological regulation positive regulation of biological process response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus positive regulation of response to external stimulus taxis regulation of response to stimulus response to chemical regulation of locomotion locomotion cellular component organization plasma membrane bounded cell projection organization cell projection organization lamellipodium organization cellular process cellular component organization or biogenesis cellular response to stimulus regulation of cellular process cell surface receptor signaling pathway signaling cell death extrinsic apoptotic signaling pathway cell communication apoptotic signaling pathway signal transduction apoptotic process programmed cell death organelle organization actin cytoskeleton organization actin filament-based process cytoskeleton organization substrate-dependent cell migration, cell extension plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly substrate-dependent cell migration cell migration cell motility cell projection assembly multicellular organismal process cellular developmental process plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process nervous system development generation of neurons anatomical structure morphogenesis neuron development axon extension regulation of growth axonogenesis regulation of cellular component size developmental growth regulation of biological quality developmental growth involved in morphogenesis regulation of cellular component organization regulation of developmental process cell growth regulation of axon extension regulation of extent of cell growth regulation of cell size neuron projection extension regulation of developmental growth developmental cell growth growth axon development regulation of cell growth cell morphogenesis involved in neuron differentiation regulation of anatomical structure size cell junction organization modification of postsynaptic actin cytoskeleton synapse organization modification of postsynaptic structure modification of synaptic structure cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport regulation of cell projection assembly regulation of cell projection organization regulation of cellular component biogenesis dendritic spine maintenance dendritic spine organization postsynapse organization cellular component maintenance neuron projection organization catabolic process macroautophagy autophagy regulation of mitophagy regulation of catabolic process regulation of autophagy regulation of macroautophagy mitophagy metabolic process regulation of autophagy of mitochondrion process utilizing autophagic mechanism regulation of metabolic process autophagy of mitochondrion positive regulation of organelle organization regulation of cytoskeleton organization regulation of actin filament-based process positive regulation of cellular component organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of protein polymerization protein-containing complex assembly regulation of actin filament polymerization positive regulation of cellular process protein polymerization actin polymerization or depolymerization regulation of actin filament organization actin filament polymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of actin polymerization or depolymerization actin filament organization positive regulation of supramolecular fiber organization regulation of organelle organization regulation of protein polymerization regulation of actin filament length regulation of actin cytoskeleton organization regulation of supramolecular fiber organization supramolecular fiber organization positive regulation of actin filament polymerization system process positive regulation of smooth muscle contraction regulation of system process muscle contraction muscle system process regulation of muscle system process smooth muscle contraction regulation of muscle contraction regulation of smooth muscle contraction positive regulation of muscle contraction positive regulation of multicellular organismal process regulation of multicellular organismal process focal adhesion assembly cell-substrate junction assembly cell-substrate adhesion cell adhesion cell-matrix adhesion cell junction assembly cell-substrate junction organization negative regulation of signaling negative regulation of biological process regulation of signal transduction regulation of programmed cell death negative regulation of cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic process regulation of cell communication regulation of apoptotic signaling pathway import into cell receptor-mediated endocytosis endocytosis vesicle-mediated transport	cellular anatomical structure cell junction anchoring junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure synapse intracellular membraneless organelle actin cytoskeleton intracellular organelle cellular anatomical structure cell junction anchoring junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure synapse intracellular membraneless organelle actin cytoskeleton intracellular organelle postsynapse cytoskeleton organelle membraneless organelle postsynaptic cytoskeleton postsynaptic actin cytoskeleton clathrin-coated pit membrane endomembrane system cell periphery cell cortex cytoplasm podosome cytosol growth cone axon distal axon neuron projection site of polarized growth glutamatergic synapse voltage-gated potassium channel complex protein-containing complex plasma membrane protein complex plasma membrane potassium channel complex membrane protein complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex membrane-bounded organelle Golgi apparatus intracellular membrane-bounded organelle neuron spine dendritic spine somatodendritic compartment dendrite dendritic tree ruffle mitotic spindle spindle mitotic spindle midzone spindle midzone microtubule cytoskeleton polymeric cytoskeletal fiber actin filament supramolecular fiber supramolecular polymer supramolecular complex cortical cytoskeleton endoplasmic reticulum
A	Lysozyme C	hydrolase activity, acting on glycosyl bonds hexosaminidase activity beta-N-acetylhexosaminidase activity beta-N-acetylglucosaminidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity peptidoglycan muralytic activity lysozyme activity identical protein binding protein binding binding	catabolic process cell wall organization or biogenesis metabolic process cellular process macromolecule metabolic process macromolecule catabolic process cell wall macromolecule catabolic process cell wall macromolecule metabolic process biological process involved in interspecies interaction between organisms disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing response to stimulus catabolic process cell wall organization or biogenesis metabolic process cellular process macromolecule metabolic process macromolecule catabolic process cell wall macromolecule catabolic process cell wall macromolecule metabolic process biological process involved in interspecies interaction between organisms disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing response to stimulus response to other organism defense response response to external stimulus defense response to Gram-negative bacterium response to biotic stimulus defense response to bacterium response to bacterium response to stress response to external biotic stimulus defense response to Gram-positive bacterium	cellular anatomical structure intracellular anatomical structure cytoplasm extracellular region extracellular space membrane-bounded organelle intracellular organelle organelle endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR035837	Tyrosine-protein kinase ABL, SH2 domain	Domain
C	IPR017441	Protein kinase, ATP binding site	Binding Site
C	IPR036860	SH2 domain superfamily	Homologous Superfamily
C	IPR008266	Tyrosine-protein kinase, active site	Active Site
C	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
C	IPR000980	SH2 domain	Domain
C	IPR036028	SH3-like domain superfamily	Homologous Superfamily
C	IPR000719	Protein kinase domain	Domain
C	IPR015015	F-actin binding	Domain
C	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
C	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
C	IPR001452	SH3 domain	Domain
C	IPR050198	Non-receptor tyrosine kinases involved in cell signaling	Family
B	IPR036028	SH3-like domain superfamily	Homologous Superfamily
B	IPR003134	Hs1/Cortactin	Repeat
B	IPR035716	Cortactin, SH3 domain	Domain
B	IPR001452	SH3 domain	Domain
A	IPR001916	Glycoside hydrolase, family 22	Family
A	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily
A	IPR019799	Glycoside hydrolase family 22 domain	Domain
A	IPR000974	Glycoside hydrolase, family 22, lysozyme	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C	Pharos: P42684	acne Chronic Myelocytic Leukemia Accelerated Phase dermatofibrosarcoma protuberans medulloblastoma pancreatic intraductal papillary-mucinous neoplasm systemic mastocytosis chronic myelogenous leukemia, BCR-ABL1 positive gastrointestinal stromal tumor tuberculosis chronic eosinophilic leukemia idiopathic hypereosinophilic syndrome ovarian cancer